Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00413
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                161   8e-40
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              98   8e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           89   5e-18
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             35   0.065
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             31   1.1  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     31   1.4  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.4  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   2.4  
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       30   2.4  
SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)         29   5.6  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   5.6  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   7.4  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   7.4  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   9.8  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        28   9.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  161 bits (390), Expect = 8e-40
 Identities = 73/88 (82%), Positives = 83/88 (94%)
 Frame = +3

Query: 510 LDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 689
           LD+ILPP+RP+  PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKS
Sbjct: 91  LDSILPPSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKS 150

Query: 690 VEMHHEALQEAVPGDNVGFNVKNVSSRN 773
           VEMHHE+L EA+PGDNVGFNVKNVS ++
Sbjct: 151 VEMHHESLAEALPGDNVGFNVKNVSVKD 178



 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = +2

Query: 29  ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 142
           ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 23  ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +1

Query: 415 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIE 507
           NM+  +++MPWFK W +ER      KE  A G  L E
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFE 89


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 43/73 (58%), Positives = 56/73 (76%)
 Frame = +2

Query: 35  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 214
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 215 TREHALLAFTLGV 253
           TREHA+L  +LGV
Sbjct: 61  TREHAILVRSLGV 73


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 37/74 (50%), Positives = 53/74 (71%)
 Frame = +2

Query: 32  TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 211
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 212 QTREHALLAFTLGV 253
           QTREHA+LA T GV
Sbjct: 269 QTREHAMLAKTAGV 282



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 17/40 (42%), Positives = 30/40 (75%)
 Frame = +1

Query: 253 QQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 372
           + L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 283 KHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 528 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 707
           P R T   L   +   + I G GT+  G + +G +     V      +T +VKS++M  +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163

Query: 708 ALQEAVPGD 734
            + +A  GD
Sbjct: 164 PVDKASQGD 172


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 77  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 543 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEA 710
           ++P    + D Y + G+GTV  G    G+++    ++  P  +       ++S+      
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161

Query: 711 LQEAVPGDNVGFNVK 755
           ++E   G    F++K
Sbjct: 162 VKEVRGGQTASFSLK 176


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 29  ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
           I++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 65  ISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 83  IIDAPGHRDFIKNMITGTSQADCAVLIV 166
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 29  ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 172
           IT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 743 TYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVY 573
           T ++SRYS++E  + H + +   S        + TW Q   F++   H +N   + Y
Sbjct: 106 TSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162


>SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)
          Length = 1067

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = -3

Query: 545 VSGAGRWQDGIETSMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCHPEMGTKATAAGL 366
           V    R +D +ET  +H+  ALP L S     N G  V G+ M+S     +G  + AA +
Sbjct: 439 VEAGMRLKDFVETLDKHYGLALPVLGS-----NAGQTVAGAAMVSSHGSGLGAASLAASV 493

Query: 365 *PIFLMYEDTSFLISSNLGS 306
             + L+   +   +  +LGS
Sbjct: 494 VGVHLI-TSSGIQVKLSLGS 512


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 739 TLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLPTGTVPIP 587
           TLSPGT +   +        S   +A  +TT+ P   T PV+TLP  +   P
Sbjct: 32  TLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAP 83


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 403 WHGDNMLEPSTKMPWFKGWQVERKE 477
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 71  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 86  IDAPGHRDFIKNMITGTSQADCAVLIVA 169
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 286  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 426
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 459 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 349
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 694 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 569
           +TD+TS+ M+    TT +      ++T  T  + I  I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 4   N*RLSVSXYHNRYCSLEVRN 63
           N +L +S YH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 629 HTSFNSADGHGTNTTDFVYVLQGKTQGLVSGAGRWQDGIETSMRHFPSAL 480
           HT+  + D  G       Y+   K QGL  G   W+DG   S R+F S +
Sbjct: 36  HTTVKNLDEFGNTVNQIDYLC--KWQGLPYGESTWEDGNLIS-RYFQSEI 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,511,673
Number of Sequences: 59808
Number of extensions: 620611
Number of successful extensions: 2187
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2182
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)