Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00413
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 172 3e-43
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 163 1e-40
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 163 1e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 163 1e-40
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 101 4e-22
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 101 4e-22
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 91 8e-19
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 8e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 8e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 8e-11
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 63 2e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 63 2e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.043
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.043
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.043
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.40
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.70
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 31 0.70
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.2
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.2
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.2
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 30 1.6
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 2.1
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 2.1
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.1
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.8
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.8
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.8
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.8
Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 8.7
AF106584-6|AAC78220.1| 424|Caenorhabditis elegans Hypothetical ... 28 8.7
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 172 bits (418), Expect = 3e-43
Identities = 98/158 (62%), Positives = 105/158 (66%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 209 GQTREHALLAFTLGVNSSS*E*TKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLS 388
GQTREHALLA TLGV + + L T SPD +SRR T Q L
Sbjct: 131 GQTREHALLAQTLGVK-------QLVSLRSPTRSPD----------SSRRSDTIQRLFHL 173
Query: 389 CPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 502
D TETTC C GSRDG + RK L E S
Sbjct: 174 SQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 163 bits (396), Expect = 1e-40
Identities = 72/89 (80%), Positives = 83/89 (93%)
Frame = +3
Query: 507 SLDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVK 686
+LD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVK
Sbjct: 197 ALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVK 256
Query: 687 SVEMHHEALQEAVPGDNVGFNVKNVSSRN 773
SVEMHHE+L EAVPGDNVGFNVKNVS ++
Sbjct: 257 SVEMHHESLPEAVPGDNVGFNVKNVSVKD 285
Score = 138 bits (334), Expect = 4e-33
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +1
Query: 250 CQQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEP 429
C L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE
Sbjct: 111 CAVLVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEV 170
Query: 430 STKMPWFKGWQVERKEGKADGKCLIE 507
S+ MPWFKGW VERKEG A GK L+E
Sbjct: 171 SSNMPWFKGWAVERKEGNASGKTLLE 196
Score = 99 bits (238), Expect = 2e-21
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 169
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 163 bits (396), Expect = 1e-40
Identities = 72/89 (80%), Positives = 83/89 (93%)
Frame = +3
Query: 507 SLDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVK 686
+LD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVK
Sbjct: 231 ALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVK 290
Query: 687 SVEMHHEALQEAVPGDNVGFNVKNVSSRN 773
SVEMHHE+L EAVPGDNVGFNVKNVS ++
Sbjct: 291 SVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
Score = 151 bits (366), Expect = 5e-37
Identities = 70/75 (93%), Positives = 73/75 (97%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 209 GQTREHALLAFTLGV 253
GQTREHALLA TLGV
Sbjct: 131 GQTREHALLAQTLGV 145
Score = 138 bits (335), Expect = 3e-33
Identities = 63/85 (74%), Positives = 70/85 (82%)
Frame = +1
Query: 253 QQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPS 432
+QLIV NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S
Sbjct: 146 KQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVS 205
Query: 433 TKMPWFKGWQVERKEGKADGKCLIE 507
+ MPWFKGW VERKEG A GK L+E
Sbjct: 206 SNMPWFKGWAVERKEGNASGKTLLE 230
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 163 bits (396), Expect = 1e-40
Identities = 72/89 (80%), Positives = 83/89 (93%)
Frame = +3
Query: 507 SLDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVK 686
+LD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVK
Sbjct: 231 ALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVK 290
Query: 687 SVEMHHEALQEAVPGDNVGFNVKNVSSRN 773
SVEMHHE+L EAVPGDNVGFNVKNVS ++
Sbjct: 291 SVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
Score = 151 bits (366), Expect = 5e-37
Identities = 70/75 (93%), Positives = 73/75 (97%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 209 GQTREHALLAFTLGV 253
GQTREHALLA TLGV
Sbjct: 131 GQTREHALLAQTLGV 145
Score = 138 bits (335), Expect = 3e-33
Identities = 63/85 (74%), Positives = 70/85 (82%)
Frame = +1
Query: 253 QQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPS 432
+QLIV NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S
Sbjct: 146 KQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVS 205
Query: 433 TKMPWFKGWQVERKEGKADGKCLIE 507
+ MPWFKGW VERKEG A GK L+E
Sbjct: 206 SNMPWFKGWAVERKEGNASGKTLLE 230
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 101 bits (243), Expect = 4e-22
Identities = 47/84 (55%), Positives = 59/84 (70%)
Frame = +2
Query: 2 QTKXXXXXXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
+T+ +T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TG
Sbjct: 225 ETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
Query: 182 EFEAGISKNGQTREHALLAFTLGV 253
EFE G GQT+EHALL +LGV
Sbjct: 285 EFETGFENGGQTKEHALLLRSLGV 308
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/68 (36%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPS 432
QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 310 QLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-R 364
Query: 433 TKMPWFKG 456
++ W+ G
Sbjct: 365 MELDWYDG 372
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +3
Query: 510 LDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 689
+D+ + P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T
Sbjct: 379 IDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVK 437
Query: 690 VEMHHEALQEAVPGDNV 740
+++ + GD +
Sbjct: 438 ECANNDGSRHCFAGDYI 454
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 101 bits (243), Expect = 4e-22
Identities = 47/84 (55%), Positives = 59/84 (70%)
Frame = +2
Query: 2 QTKXXXXXXITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
+T+ +T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TG
Sbjct: 243 ETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
Query: 182 EFEAGISKNGQTREHALLAFTLGV 253
EFE G GQT+EHALL +LGV
Sbjct: 303 EFETGFENGGQTKEHALLLRSLGV 326
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/68 (36%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPS 432
QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 328 QLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-R 382
Query: 433 TKMPWFKG 456
++ W+ G
Sbjct: 383 MELDWYDG 390
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +3
Query: 510 LDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 689
+D+ + P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T
Sbjct: 397 IDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVK 455
Query: 690 VEMHHEALQEAVPGDNV 740
+++ + GD +
Sbjct: 456 ECANNDGSRHCFAGDYI 472
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 91.1 bits (216), Expect = 8e-19
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +2
Query: 32 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 211
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 212 QTREHALLAFTLGV 253
QTREH++L T GV
Sbjct: 234 QTREHSMLVKTAGV 247
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Frame = +1
Query: 253 QQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEP 429
+ L++ VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + +
Sbjct: 248 KHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDR 307
Query: 430 ST--KMPWFKG 456
T + W+ G
Sbjct: 308 PTGSEGNWYSG 318
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 510 LDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVK 686
+D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P +V
Sbjct: 325 IDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVL 382
Query: 687 SVEMHHEALQEAVPGDNVGFNVKNV 761
+ + V GDN+ F +K +
Sbjct: 383 QIWADDVETERVVAGDNIKFKLKGI 407
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.5 bits (150), Expect = 8e-11
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 151
Query: 209 GQTREHALLAFTLGV 253
QTREH LLA +GV
Sbjct: 152 -QTREHLLLARQVGV 165
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +3
Query: 519 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV- 692
++P + ++P+ + VY I G GTV G++E G+LK G I + T VKSV
Sbjct: 242 VIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVI 300
Query: 693 ---EMHHEALQEAVPGDNVGFNVKNVSSRN 773
E + + +A PGD +G ++ + ++
Sbjct: 301 SGLESFRKTVDQAEPGDQLGVLLRGLGPKD 330
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.5 bits (150), Expect = 8e-11
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 152
Query: 209 GQTREHALLAFTLGV 253
QTREH LLA +GV
Sbjct: 153 -QTREHLLLARQVGV 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +3
Query: 519 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV- 692
++P + ++P+ + VY I G GTV G++E G+LK G I + T VKSV
Sbjct: 243 VIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVI 301
Query: 693 ---EMHHEALQEAVPGDNVGFNVKNVSSRN 773
E + + +A PGD +G ++ + ++
Sbjct: 302 SGLESFRKTVDQAEPGDQLGVLLRGLGPKD 331
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.5 bits (150), Expect = 8e-11
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 152
Query: 209 GQTREHALLAFTLGV 253
QTREH LLA +GV
Sbjct: 153 -QTREHLLLARQVGV 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +3
Query: 519 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV- 692
++P + ++P+ + VY I G GTV G++E G+LK G I + T VKSV
Sbjct: 243 VIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVI 301
Query: 693 ---EMHHEALQEAVPGDNVGFNVKNVSSRN 773
E + + +A PGD +G ++ + ++
Sbjct: 302 SGLESFRKTVDQAEPGDQLGVLLRGLGPKD 331
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/77 (46%), Positives = 47/77 (61%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 94 ITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------ 147
Query: 209 GQTREHALLAFTLGVNS 259
QT+EH +LA +GV +
Sbjct: 148 -QTKEHLILAKQVGVKN 163
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 507 SLDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANITTE 680
+LD++ P R +P+ I G GTV VG +E GVLK G V + T
Sbjct: 225 ALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTT 284
Query: 681 VKSVEMHHEALQEAVPGDNVGFNVKNV 761
+++ ++++E GD+ G + V
Sbjct: 285 ASDIQVFGKSVKEVRAGDHCGVLCRGV 311
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/77 (46%), Positives = 47/77 (61%)
Frame = +2
Query: 29 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 208
ITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 94 ITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------ 147
Query: 209 GQTREHALLAFTLGVNS 259
QT+EH +LA +GV +
Sbjct: 148 -QTKEHLILAKQVGVKN 163
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 507 SLDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANITTE 680
+LD++ P R +P+ I G GTV VG +E GVLK G V + T
Sbjct: 225 ALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTT 284
Query: 681 VKSVEMHHEALQEAVPGDNVGFNVKNV 761
+++ ++++E GD+ G + V
Sbjct: 285 ASDIQVFGKSVKEVRAGDHCGVLCRGV 311
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.043
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +3
Query: 519 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 698
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 699 HHEALQEAVPGDNVGFNV 752
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 77 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 238
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLA 120
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.043
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +3
Query: 519 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 698
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 699 HHEALQEAVPGDNVGFNV 752
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 35.5 bits (78), Expect = 0.043
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 29 ITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
IT I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 189 ITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 549 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQ 716
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431
Query: 717 EAVPGDNVGFNVKNVSSRN 773
G + F +K + ++
Sbjct: 432 IVKCGQSASFALKKIPKKD 450
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 549 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQ 716
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432
Query: 717 EAVPGDNVGFNVKNVSSRN 773
G + F +K + ++
Sbjct: 433 IVKCGQSASFALKKIPKKD 451
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 71 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
Y + +ID PGH DF + + D +L+VAA G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 35 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 35 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 74 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 169
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 32 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 32 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 83 IIDAPGHRDFIKNMITGTSQADCAVLIV 166
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 633 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 758
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 341 PHTSRRLATTQLLSLSCPFLD 403
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 341 PHTSRRLATTQLLSLSCPFLD 403
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 341 PHTSRRLATTQLLSLSCPFLD 403
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 341 PHTSRRLATTQLLSLSCPFLD 403
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical
protein F58A4.7c protein.
Length = 428
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 502 IEVSMPSCHLPAPLT-SPCVFPCKTYTKSVVLVPCPSA 612
+E+S PS P+PLT +P +F T+S +L +A
Sbjct: 322 VEISSPSLSTPSPLTAAPIIFSTAVPTQSSILFQTAAA 359
>Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical
protein F58A4.7b protein.
Length = 431
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 502 IEVSMPSCHLPAPLT-SPCVFPCKTYTKSVVLVPCPSA 612
+E+S PS P+PLT +P +F T+S +L +A
Sbjct: 324 VEISSPSLSTPSPLTAAPIIFSTAVPTQSSILFQTAAA 361
>Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical
protein F58A4.7a protein.
Length = 429
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 502 IEVSMPSCHLPAPLT-SPCVFPCKTYTKSVVLVPCPSA 612
+E+S PS P+PLT +P +F T+S +L +A
Sbjct: 322 VEISSPSLSTPSPLTAAPIIFSTAVPTQSSILFQTAAA 359
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 77 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 172
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>AF106584-6|AAC78220.1| 424|Caenorhabditis elegans Hypothetical
protein F54A5.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +3
Query: 12 AEREXVSQSILLSGSSKLA---STMLPSLMLLDTEISSRT*SQEPLRLIALCSS*LPVPV 182
AE S S S +S A S + S+ D E SSR + E + S V
Sbjct: 292 AEASAASTSSASSSASSTANHDSVSVSSMSPRDEETSSRNTTPETAISPSPAVSTFEVSR 351
Query: 183 NSKLVSLR--TVKPVSMPCSLSPSVS 254
S ++S T P+S+P ++ PSVS
Sbjct: 352 PSAIISATSSTTSPISIPATIIPSVS 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,349,648
Number of Sequences: 27780
Number of extensions: 452096
Number of successful extensions: 1509
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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