Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00412X
         (394 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   1.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   1.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.8  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   7.6  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 20/77 (25%), Positives = 26/77 (33%)
 Frame = -2

Query: 273 QPDSKELPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVL 94
           QP +   P    L  YG G  Y   A  K     S    KA   EH  + Y  K    +L
Sbjct: 61  QPTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIML 120

Query: 93  GYIPVRSPLLRKSWLVS 43
             I   +     +W  +
Sbjct: 121 AIITKMTLTQVSTWFAN 137



 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 60  SLVAASEQEYSPALNPVVLIDNG 128
           S+   S   YSP  NP  L D G
Sbjct: 24  SIGVESSAFYSPLSNPYALKDAG 46


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -1

Query: 391 FLQIFN---RLNNKFRSPSLYRSCGHI 320
           FL +F    RLNN+ R PS      HI
Sbjct: 402 FLSVFESCTRLNNESRKPSFVIQFSHI 428


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 215 PSTGKRPRSRR 183
           PS+G+ PR+RR
Sbjct: 203 PSSGRSPRTRR 213


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 179 WTGVVATRKRNLP 141
           WTG V  RK+  P
Sbjct: 237 WTGQVTVRKKRKP 249


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 127 PLSIKTTGFSAGLYS 83
           P+S++ TGFS   YS
Sbjct: 20  PVSVEPTGFSPKGYS 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,694
Number of Sequences: 336
Number of extensions: 1415
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)