Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00412X
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)                      40   0.001
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)                      40   0.001
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)                      40   0.001
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)                  40   0.001
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)                    35   0.027
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)                       35   0.027
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   0.33 
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.33 
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)                   29   1.0  
SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  27   4.1  
SB_42721| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_55199| Best HMM Match : PKD (HMM E-Value=0.75)                      27   4.1  
SB_5107| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.1  
SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
          Length = 148

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 59  ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 95


>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 5   ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 41


>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
          Length = 148

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 59  ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 95


>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 33  ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 69


>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
          Length = 147

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 58  ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 94


>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
          Length = 206

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 117 ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 153


>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 16  ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 52


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 263 ESGCLRVQP*AGGKLHXXLNMTARPIQRRRPKFIIKS 373
           ESGCL +QP  GGKLH  LN+  RPI  +  +  +KS
Sbjct: 722 ESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKS 758


>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
          Length = 187

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -2

Query: 324 IFSX*WSLPPA*GCTLKQPDSKE 256
           IFS  WSLPP  GC  KQPDS +
Sbjct: 106 IFSFRWSLPPILGCIPKQPDSSK 128


>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 156

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -2

Query: 324 IFSX*WSLPPA*GCTLKQPDSKE 256
           IFS  WSLPP  GC  KQPDS +
Sbjct: 75  IFSFRWSLPPILGCIPKQPDSSK 97


>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 309 WSLPPA*GCTLKQPDSKE 256
           WSLPP  GC  KQPDS +
Sbjct: 63  WSLPPILGCIPKQPDSSK 80


>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 309 WSLPPA*GCTLKQPDSKE 256
           WSLPP  GC  KQPDS +
Sbjct: 36  WSLPPILGCIPKQPDSSK 53


>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
          Length = 1130

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 295 RLGLH--SQATRL*GAPSRRDPPSLRAWHPLRENG 197
           RLG+H  S AT +   PSRR PPS+   H +R+ G
Sbjct: 713 RLGVHKHSVATHVEADPSRRRPPSVHRCH-IRKGG 746


>SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 310 MEFTTRLGLH--SQATRL*GAPSRRDPPSLRAWH 215
           + F  RLG+H  S  T +   PSRR PPS+   H
Sbjct: 237 VRFGLRLGVHKHSVVTHVEADPSRRRPPSVHRCH 270


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 189 KTNLDRSRRDEKAEPPEHHISRYRLKQRDSV-LGYIPVRSPLLRKSWLVSFPP 34
           KT    S      + P    +RYR++ RDSV   ++  R+P    S L++F P
Sbjct: 364 KTANATSSATNTTDLPRRRGTRYRIRARDSVDKSFVKFRNPNPSFSGLLTFEP 416


>SB_42721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 295 RLGLHSQ--ATRL*GAPSRRDPPSL 227
           RLG+H Q  AT +   PSRR PPS+
Sbjct: 440 RLGVHKQNVATHVEADPSRRRPPSV 464


>SB_55199| Best HMM Match : PKD (HMM E-Value=0.75)
          Length = 462

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 310 MEFTTRLGLHSQATRL*GAPSRRDPPSLRAWHPLREN 200
           ++ T+ + + S  T+    P RR   ++RAWH  RE+
Sbjct: 411 VQATSEVTVASVETQTDAVPERRPHRAVRAWHRFRES 447


>SB_5107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 310 MEFTTRLGLHSQAT 269
           MEFTT  GLHSQ T
Sbjct: 1   MEFTTHFGLHSQTT 14


>SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -2

Query: 276 KQPDSKELPLAA-TLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEH 136
           K+P  + + L   T+ R+GPGT+         N+ R        PP H
Sbjct: 262 KRPRHRHISLCQETITRHGPGTITTPPRHVPDNITRHGPGTITTPPRH 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,483
Number of Sequences: 59808
Number of extensions: 200780
Number of successful extensions: 519
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)