Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00412X
         (394 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   3.4  
At3g59620.1 68416.m06652 hypothetical protein                          27   6.0  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    26   7.9  
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami...    26   7.9  
At1g31240.1 68414.m03823 expressed protein identical to hypothet...    26   7.9  

>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 127 PLSIKTTGFSAGLYSCSLAATKEIL 53
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


>At3g59620.1 68416.m06652 hypothetical protein
          Length = 120

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 166 TTPVQVRLERGRFPVEGAR 222
           T P Q   E GR PVEGAR
Sbjct: 62  TEPFQFDREHGRVPVEGAR 80


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 218 APSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 117
           AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 386 APVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 457

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 229 LRAWHPLRENGPVQDELGQ 173
           L AW P+   GP++DE G+
Sbjct: 285 LDAWAPMGPKGPIRDEAGK 303


>At1g31240.1 68414.m03823 expressed protein identical to
           hypothetical protein GB:AAD21690 GI:4512621 from
           (Arabidopsis thaliana)
          Length = 277

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = -2

Query: 288 GCTLKQPDSKELPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQ 109
           G T+   +S+ L  +A LR       Y    PF   L R  RD        H++  R   
Sbjct: 105 GSTVHDIESQCLIKSAVLRNLSDFVTYAPEIPFAKPLPRRERDGSFGGDLDHVAVTRSVD 164

Query: 108 RDSVLGYIP 82
             SV  ++P
Sbjct: 165 VTSVPAWLP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,549,020
Number of Sequences: 28952
Number of extensions: 138388
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)