Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00411
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0896 + 22373348-22374946 33 0.34
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 31 0.79
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 2.4
10_01_0161 + 1817783-1818862 29 3.2
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 29 3.2
12_02_0428 - 18980002-18980075,18980201-18980434,18980508-189805... 29 4.2
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 29 4.2
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 4.2
11_06_0345 + 22544825-22544921,22545751-22545773,22546604-225466... 29 5.5
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 29 5.5
12_01_0642 + 5414964-5415410,5415535-5416677 28 7.3
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 28 7.3
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 28 7.3
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 7.3
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 28 7.3
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 9.7
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 28 9.7
>07_03_0896 + 22373348-22374946
Length = 532
Score = 32.7 bits (71), Expect = 0.34
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = +2
Query: 92 HCESGA-LKCSPGTEGPCAAEQE--SKDKPSQITTDDASAVQEMQSEVECLAGTEWETTA 262
HC +GA CSPG PCA + D+P++ + A++ + L + +
Sbjct: 70 HCTAGADPSCSPGAASPCALPPGAWAWDRPAETSVVSEWALKCAGPALVSLPASSFFAGC 129
Query: 263 TSAGALIQE-SPSA*GRTAVIKLYLLNLCVVSQAPPSRGIVTLASA*ITVWAYA 421
+ G L+ + S GR K+ L++L +S A G++T S VWAYA
Sbjct: 130 LAGGFLLTTLADSLLGRR---KMLLVSLASMSVA----GVLTAFSP--NVWAYA 174
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 131 EGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWET-TATSAGALIQESPSA*G 307
E P A ES+DK ++ +A E ++V +AG E T TAT + AL+++ A G
Sbjct: 642 EVPVTASSESEDKEPAAVPEEVAASSEKTADV-AVAGAEASTATATISPALVKQLREATG 700
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 83 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 208
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>10_01_0161 + 1817783-1818862
Length = 359
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 300 ALGDS*IRAPAEVAVVSHSVPARHSTSDCISWTADASSV 184
A D+ IR P +V + S+P R++ + W DA++V
Sbjct: 46 AADDNSIRLPRKVGRTASSLPLRYAAPQLLHWPDDAAAV 84
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/84 (21%), Positives = 33/84 (39%)
Frame = +1
Query: 88 ATLRKWSPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRVGDNCHF 267
A + +W P M++WH + +A++ Q ++ + G G G CH
Sbjct: 669 ADVSEWQPSMKNWHTKDY-EKAKVHLQCDNGQKITEIKFASFGTPQGSCGSYTEG-GCHA 726
Query: 268 CRCSDSGVAECLRQDSCDQIIFTE 339
+ D C+ Q+ C + E
Sbjct: 727 HKSYDIFWKNCVGQERCGVSVVPE 750
>12_02_0428 -
18980002-18980075,18980201-18980434,18980508-18980594,
18981843-18981907,18982132-18982220,18982291-18982636,
18984011-18984019,18984378-18984544
Length = 356
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 525 YNCYTGRPRRSRSAFSALDQLKLLG 451
Y C+ G+P ++ F +D++KL G
Sbjct: 273 YRCFFGKPSNDQAMFDEMDKVKLFG 297
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 631 HSFFHIVFGAHSFFGSIMCSVQASSLQMPYPSALHLQLLHWSTTTIPERILCPG 470
++F H+ + H FG A SA ++Q + +S IPE++ PG
Sbjct: 540 NTFSHMSWSLHICFGEPYMDQAAVFASWDLASAWYIQEVGFSAAVIPEKLKLPG 593
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 431 ASKEHRPRPLSKQTQVLQSLWKEVPG 354
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>11_06_0345 +
22544825-22544921,22545751-22545773,22546604-22546690,
22546809-22546885,22547357-22547510
Length = 145
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 106 SPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRVGDNC 261
SP SW RR + A++KR E ++R + +G G N NC
Sbjct: 6 SPPTASWSRRCRPATAQVKRIAEDPDDRSLDKSAKVVIGGGQDAMNVTMTNC 57
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -2
Query: 654 PKCTNTCCIHFSTS-SSAHILSLAR*CVQC---RLRHYK 550
P+C N+C + FS S H + L R C LR+YK
Sbjct: 27 PRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYYK 65
>12_01_0642 + 5414964-5415410,5415535-5416677
Length = 529
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 LKCSPGTEGPC-AAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWETTATSAGALI 283
L+C PG C +D PS +TT A + VE +A ++ G L+
Sbjct: 32 LRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLV 90
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 540 GYGICSDEACTEHIIEPKKECAPKTMWKNECNTCW--CTSDGKPMCTRMECI 689
G G C D + + + +K C ++EC C CT P C+ CI
Sbjct: 133 GKGRCKDIVSRKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAMCI 184
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 573 EHIIEPKKECAPKTMWKNECNTCWCTSDGKPMCTRM 680
EHI K C P T +N N+C T + C ++
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDKCCKI 56
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 97 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 189
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -2
Query: 570 CRLRH-YKCRIHRHCTYN-CYTGRPRRSRSAFSALDQLKLLGS*RSS 436
CR H +H T CY RP R R F L+ L L G R++
Sbjct: 46 CRRWHRIDALTRKHVTVAFCYAARPARLRERFPRLESLSLKGKPRAA 92
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 337 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 459
EP G F+ +TC+ G+GL + A + S P++
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRR 82
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 243 VPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 88
+ RH+ D + D LGL ++C+ HG S P L + +C+
Sbjct: 277 IKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,990,120
Number of Sequences: 37544
Number of extensions: 607235
Number of successful extensions: 1884
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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