Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00411
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78720.1 68414.m09175 protein transport protein sec61, putati...    29   3.5  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    29   4.6  
At1g34580.1 68414.m04298 monosaccharide transporter, putative si...    29   4.6  

>At1g78720.1 68414.m09175 protein transport protein sec61, putative
           similar to SP|P38377 Protein transport protein Sec61
           alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
           familiaris}; contains Pfam profile PF00344: eubacterial
           secY protein
          Length = 475

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 724 WISSDFSGVLLVMHSILVHMGLPS---EVHQHVLHSFFHIVF--GAHSFFGSIMCSVQAS 560
           W  S++SG  + +  I  ++  PS   E+  H  H+ F++VF   A + F      V  S
Sbjct: 327 WKESEYSGQSIPVGGIAYYITAPSSLAEMATHPFHALFYLVFMLAACALFSKTWIEVSGS 386

Query: 559 S 557
           S
Sbjct: 387 S 387


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +3

Query: 87  RDTAKVEP*NAVLAQKAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRQLPL 266
           RD + ++P N    +  +    KN++ N  +     ++ S + S +W    +P  RQ  L
Sbjct: 637 RDESSIKPDNGDKRKNQNGNHKKNREINMSKRHDPGKVHSVEVSERWERREQPKSRQRDL 696


>At1g34580.1 68414.m04298 monosaccharide transporter, putative
           similar to monosaccharide transporter 3 [Oryza sativa]
           GI:11991114, monosaccharide transporter [Nicotiana
           tabacum] GI:19885, monosaccharide transporter 1 [Oryza
           sativa] GI:11991110; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 506

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 665 GFTIRSAPTRVAFIFPHRLRRTFFLWLDNVFSAGFVTTNAVSIG 534
           GFT ++AP  ++ + P R R  F +      S G V  N ++ G
Sbjct: 148 GFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYG 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,405
Number of Sequences: 28952
Number of extensions: 446829
Number of successful extensions: 1423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)