Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00410
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.3  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   4.4  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   7.6  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 438 KYFIDFQFYNITFITKKTLADINFKLYLKLNVLL 337
           K FI+F F+NIT  +K T       L + L + L
Sbjct: 706 KDFIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 86  DFALVLTLSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAG 205
           D A +  L  T+ A +PR K+FK+ EK  +  R    +AG
Sbjct: 267 DNARLRNLVDTALASDPRIKLFKEQEKAAKAARKWEREAG 306


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 67  RKDPILRLRSGADFEHDQRCSRAQVED 147
           RK     LRSG++  H QR S  +++D
Sbjct: 629 RKKAFQLLRSGSELAHGQRPSHPKLKD 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,299
Number of Sequences: 5004
Number of extensions: 27378
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)