Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00410
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0661 - 24100918-24101940                                         29   2.5  
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926...    28   4.3  
11_04_0009 - 12132781-12133272                                         28   4.3  
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720...    27   10.0 
04_04_0617 - 26642602-26642637,26643307-26643565,26644610-266447...    27   10.0 

>01_05_0661 - 24100918-24101940
          Length = 340

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -1

Query: 222 RTSIAGPALTMPSRMFLPIFSIFLKIFHLGSGAALVMLKVSTRAKSKDRIFAKFIVSLC 46
           R + A P  TM     L   + F KI +LG GA+ V+ KV  R      +FA      C
Sbjct: 20  RPAAAAPEATMMDLGQLLRLTDFDKIANLGDGASGVVAKVLLRGCGSSAVFALKTAHYC 78


>12_01_0933 -
           9263023-9263146,9263224-9263416,9263495-9263634,
           9263760-9263881,9263970-9264039,9264463-9264498,
           9264567-9264692,9265294-9265424,9265549-9265645,
           9265858-9266027,9267817-9267874,9268758-9269074
          Length = 527

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 271 FMAYVLRSFSYSFSRTKDLD 212
           F+   L SFS SFSRTK++D
Sbjct: 175 FLQETLASFSLSFSRTKEVD 194


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 149 RSSTWAREQRWSCSKSAPERSRRIGSLR 66
           R   W RE+R S  +S P + RR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>09_04_0257 +
           16170914-16171113,16171362-16171554,16171929-16172034,
           16172293-16172415,16172739-16172830,16173276-16173376,
           16173458-16173524,16174016-16174108,16174247-16174375
          Length = 367

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 467 FFFFFLN*VQNILLIFNFTT*RLSLRKLWQTLTSNY 360
           FFFFFL  + N L ++N  +  L +  ++Q L+ N+
Sbjct: 55  FFFFFLFHLSNSLKLYNLLS--LKILPIYQKLSGNH 88


>04_04_0617 -
           26642602-26642637,26643307-26643565,26644610-26644796,
           26644981-26645044
          Length = 181

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = -2

Query: 191 CR--HECFCPFFQFS*RSSTWAREQRWSCSKSAPERS 87
           CR  H   CPF      SS W    R+ C +   ER+
Sbjct: 129 CRPLHPARCPFGPGPGGSSRWTGRMRYQCGRQRDERA 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,880
Number of Sequences: 37544
Number of extensions: 162948
Number of successful extensions: 333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)