Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00409
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 208 VSQSMEPSSTSTTTVSLRAL 267
           +S    PS+T+TTT +  AL
Sbjct: 2   ISSKFSPSTTTTTTTTSSAL 21


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 208 VSQSMEPSSTSTTTVSLRAL 267
           +S    PS+T+TTT +  AL
Sbjct: 2   ISSKFSPSTTTTTTTTSSAL 21


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 446 SNRSNRDGQPVP*TLHRQSPSCIHRRRSG 360
           +N+SN +GQ +  +LH+  P+ +H  R G
Sbjct: 135 TNKSNGNGQIMLNSLHKYKPT-VHLVRVG 162


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 373 RWMQEGDW 396
           RW  EGDW
Sbjct: 180 RWRMEGDW 187


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 482 RTPCSEWRTCLHSNRSNRDGQPVP*TLHRQSPSCIH 375
           ++P  + R+   ++ S +DG  VP + +  SPS ++
Sbjct: 695 KSPSPQQRSPSVTDLSTKDGTTVPESNNGSSPSVLN 730


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,876
Number of Sequences: 336
Number of extensions: 4819
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)