Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00409
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 PSTLSATPAVSQSMEPSSTSTTTVSLRAL 267
           P+T SA  A S +    +T TTT+  R L
Sbjct: 238 PATPSAVVATSNATAAMTTGTTTIPTRRL 266


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 187 TLSATPAVSQSMEPSSTSTTTVS 255
           +L  T   S + EPS+T++TT+S
Sbjct: 377 SLVPTTTASPTTEPSTTTSTTIS 399


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 506 ISRLTLSGTAIAS 544
           ++RLTLSG AIAS
Sbjct: 409 LNRLTLSGNAIAS 421


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 466 SGELVCIAIGAIGTAS 419
           +GE VC A  A GTAS
Sbjct: 653 AGEYVCTAENAAGTAS 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,088
Number of Sequences: 438
Number of extensions: 5413
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)