Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00407
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.76 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    29   0.76 

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 611  ALYNLAIFGNFIHSENTETT*RILRFRYGQTNTSTIYFVLFYD*K 477
            A++N AI+GN++H E      ++L     +   S +++ L YD K
Sbjct: 1932 AVHNYAIYGNYLHLEEYINK-KLLLINPNEEPDSLLFYALAYDLK 1975


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 700 LSLSQNCFY*TRPRIRRSCARLDKFRRITELFTILLFSAILFTVKIQKLLKGFYDF 533
           +S + N FY   P     C R+ KF +   + T + F+ +L+    Q+  K F  F
Sbjct: 228 ISSAVNAFYYRDPIDENYCDRMSKFNQNDLVTTTITFTPLLYAQLYQQRCKTFRPF 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,539
Number of Sequences: 5004
Number of extensions: 58351
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)