Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00407
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0006 - 20030673-20030895,20031432-20031478,20031597-200316...    29   4.2  
09_04_0296 + 16461482-16461544,16462087-16463097                       29   4.2  
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035...    29   4.2  
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    29   5.6  
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529...    28   9.7  

>09_05_0006 -
           20030673-20030895,20031432-20031478,20031597-20031665,
           20032590-20032725,20032900-20033067,20034286-20034354,
           20034535-20034631,20034742-20034820,20035702-20035872
          Length = 352

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 499 LFYFMIERLLVARGLSSFTRT 437
           LF+F++ER  +ARG+SS  R+
Sbjct: 116 LFHFLVERCALARGISSIIRS 136


>09_04_0296 + 16461482-16461544,16462087-16463097
          Length = 357

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 188 AAGAGRSNGKPMAR--RSGYLRSRMPQYDAASLHDPTRSCSTRSSFQLDTMTN 36
           A  AGRS  + +AR   SGY  S     DA+S    + +CS+ S+   ++ T+
Sbjct: 105 AGAAGRSRRESVARPRHSGYASSTASSSDASSSSYSSFTCSSASTTDTESTTH 157


>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
            18503693-18503743,18503868-18503960,18504125-18504220,
            18504318-18504368,18504452-18504570,18504909-18505017,
            18505391-18505513,18505590-18505661,18505963-18506034,
            18506125-18506191,18506260-18506402,18506494-18506565,
            18506632-18506760,18507317-18507472,18507579-18507692,
            18507791-18507889,18507974-18508051,18508402-18508536,
            18509081-18509155,18509247-18509361,18509458-18509828,
            18509903-18509965,18510049-18510120,18510285-18510413,
            18510512-18510628,18510902-18511018
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = -3

Query: 215  GRRKSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCSTRSS 60
            GR K  S V  G      KP    SGY   RMP    A  H    +  TR S
Sbjct: 997  GRGKGHSFVPFGPPNGAHKPGVHPSGYPLPRMPFPPFAGAHSQPYAIPTRGS 1048


>12_01_0503 -
           3981603-3981730,3982858-3983023,3983057-3983139,
           3983250-3983301,3983497-3983654,3983756-3985617,
           3986029-3986093,3986176-3986340,3986836-3986893,
           3987479-3987590,3987661-3987712,3988080-3988140,
           3988220-3988377,3988705-3988787,3988897-3988945,
           3989122-3989185,3990225-3990317,3990410-3990543,
           3991364-3991585,3991815-3991937,3992103-3992267,
           3993064-3993450
          Length = 1479

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 257 PSVKRTMQSRTAM-LGRRKSDSVVAAGAGRSNGKP 156
           PS +  +  R A  + RR+SD  +AA  G S+GKP
Sbjct: 864 PSARDMLMQRPAKPITRRRSDGCLAARDGGSSGKP 898


>12_02_0961 -
           24851687-24851962,24852134-24852405,24852521-24852953,
           24853554-24853676,24853681-24853686
          Length = 369

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 462 EAFLVSPGQVGEQRLSQEGWDMLTTARSASEGDLIYF 352
           E + VS  +V ++ +   GW+    A    E DL++F
Sbjct: 69  ETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFF 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,275,607
Number of Sequences: 37544
Number of extensions: 432871
Number of successful extensions: 1421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)