Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00407
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   5.7  
SB_51695| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 633 SKRAQLRRMRGRVQ*KQFCDKLRGMTVIVSKTRIFSCSLT 752
           + RAQL R+RGRV      D+L  +   V K +++ C+LT
Sbjct: 84  NNRAQLSRLRGRVTEN---DQLADLATRVEKRKLYYCNLT 120


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -1

Query: 154  WRAGPGTCGRGCRSTTPHHCTTP-PGLAPPGHHSSWT 47
            W     TCG G RS    +CT P P     G  S WT
Sbjct: 1457 WTGCSKTCGTGFRSRI-RNCTNPVPDYGVDGEFSDWT 1492


>SB_51695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 139 GTCGRGCRSTTPHHCTTPPGLAPPGHHSSWTP 44
           G CG    + T HH T  P    P +H+S+ P
Sbjct: 4   GFCGHRAGTCTTHHTTPGPHPILPLYHTSYYP 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,066,930
Number of Sequences: 59808
Number of extensions: 473553
Number of successful extensions: 1416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)