Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00407
         (790 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        32   2.1  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    32   2.1  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    32   2.1  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    32   2.1  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    32   2.1  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     32   2.1  
AF542080-1|AAN17826.1| 1156|Homo sapiens cartilage intermediate ...    30   8.3  

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 KRTMQSRTAMLGRR-KSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCS 72
           +R+ +SR+    RR +S S   A  GRS  +  ARRSG  RSR P     S     R   
Sbjct: 642 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 701

Query: 71  TRS 63
           +RS
Sbjct: 702 SRS 704


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 KRTMQSRTAMLGRR-KSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCS 72
           +R+ +SR+    RR +S S   A  GRS  +  ARRSG  RSR P     S     R   
Sbjct: 642 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 701

Query: 71  TRS 63
           +RS
Sbjct: 702 SRS 704


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 KRTMQSRTAMLGRR-KSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCS 72
           +R+ +SR+    RR +S S   A  GRS  +  ARRSG  RSR P     S     R   
Sbjct: 642 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 701

Query: 71  TRS 63
           +RS
Sbjct: 702 SRS 704


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 KRTMQSRTAMLGRR-KSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCS 72
           +R+ +SR+    RR +S S   A  GRS  +  ARRSG  RSR P     S     R   
Sbjct: 607 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 666

Query: 71  TRS 63
           +RS
Sbjct: 667 SRS 669


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 KRTMQSRTAMLGRR-KSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCS 72
           +R+ +SR+    RR +S S   A  GRS  +  ARRSG  RSR P     S     R   
Sbjct: 432 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 491

Query: 71  TRS 63
           +RS
Sbjct: 492 SRS 494


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 KRTMQSRTAMLGRR-KSDSVVAAGAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCS 72
           +R+ +SR+    RR +S S   A  GRS  +  ARRSG  RSR P     S     R   
Sbjct: 690 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 749

Query: 71  TRS 63
           +RS
Sbjct: 750 SRS 752


>AF542080-1|AAN17826.1| 1156|Homo sapiens cartilage intermediate
           layer protein-like protein CLIP-2 protein.
          Length = 1156

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 157 PWRAGPGTCGRGCRSTTPHHCTTPPGLAPPG 65
           PW    G+CG G R     HC +P G A PG
Sbjct: 154 PWGPCSGSCGPG-RRLRRRHCPSPAGDACPG 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,063,420
Number of Sequences: 237096
Number of extensions: 2406353
Number of successful extensions: 5697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5668
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)