Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00407
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72080.1 68414.m08332 hypothetical protein                          28   6.1  
At1g35540.1 68414.m04413 transcriptional factor B3 family protei...    28   8.1  

>At1g72080.1 68414.m08332 hypothetical protein
          Length = 243

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = -3

Query: 182 GAGRSNGKPMARRSGYLRSRMPQYDAASLHDPTRSCSTRSSFQLDTMTNSTI 27
           G GR  G+   R     RSR P +       PT + +T     +     STI
Sbjct: 132 GRGRGRGRGRGRGRNRSRSRSPSHSNGGREPPTTTLNTEDHLTMQIEPPSTI 183


>At1g35540.1 68414.m04413 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02362 B3 DNA binding domain, PF02309:
           AUX/IAA family
          Length = 605

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 429 EQRLSQEGWDMLTTARSASEGDLIYFV 349
           ++ L   GW+  TT++   EGD+I FV
Sbjct: 187 QRHLLTIGWNAFTTSKKLVEGDVIVFV 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,664
Number of Sequences: 28952
Number of extensions: 321983
Number of successful extensions: 905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)