Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00406
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   100   2e-22
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    98   1e-21
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.30 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   1.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.7  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   6.5  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   6.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.6  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.6  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.6  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  100 bits (240), Expect = 2e-22
 Identities = 47/66 (71%), Positives = 55/66 (83%)
 Frame = +3

Query: 504 QGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
           + TIKFQ+KKVLCL VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG
Sbjct: 151 KSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMG 210

Query: 684 PPQRLY 701
            P RLY
Sbjct: 211 KPYRLY 216



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 44/76 (57%), Positives = 56/76 (73%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 239 MQVCVLETSSIVTRLK 286
           M +C+L  +  + R K
Sbjct: 62  MSICILGDAHDLDRAK 77



 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +1

Query: 388 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKEPL 516
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK  +
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTI 154


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +3

Query: 504 QGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
           + TIKFQ+KKVLCL VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG
Sbjct: 151 KSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMG 210

Query: 684 PPQRLY 701
            P RLY
Sbjct: 211 KPHRLY 216



 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 44/76 (57%), Positives = 57/76 (75%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 239 MQVCVLETSSIVTRLK 286
           M +C+L  +  + R K
Sbjct: 62  MAICILGDAHDLDRAK 77



 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +1

Query: 388 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKEPL 516
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK  +
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTI 154


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 41   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 205
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 543  LSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKKHW 644
            LS+A+G+++  P  L      N H+S+  L  L+K H+
Sbjct: 2706 LSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHY 2743


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 507 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 677
           G   F         +  GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 187 GATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 524 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 625
           NE      C  W C  D    C++C  ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 569 HDS**ACSECASFHQLPCVTAQETLAEC 652
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +1

Query: 538 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 657
           C FL    ++  + + +  +C+F  T++ +  +N  R+++
Sbjct: 37  CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 504 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 397
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 576 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 728
           P E  +N H+   +  ++L+ HW+ + SL M++     Q    F+ +NFMT
Sbjct: 30  PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 7/27 (25%), Positives = 19/27 (70%)
 Frame = -3

Query: 596  ILSKLIRSHVHMANCYRKTQHLLHLEL 516
            +L K++    + ++C+++ +HL+H+ L
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVL 1073


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 148
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 366 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 265
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 92  VNAVLQSSKDKKRNFLETV 148
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,123
Number of Sequences: 5004
Number of extensions: 66399
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)