Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00406
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   110   1e-24
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   110   1e-24
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   110   1e-24
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    28   6.1  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  110 bits (264), Expect = 1e-24
 Identities = 50/66 (75%), Positives = 59/66 (89%)
 Frame = +3

Query: 504 QGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
           + T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG
Sbjct: 121 RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 180

Query: 684 PPQRLY 701
            PQR+Y
Sbjct: 181 KPQRVY 186



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 37/84 (44%), Positives = 46/84 (54%)
 Frame = +1

Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
           GDQ H DEA   ++P M                           SESLIKQIPR+LGPGL
Sbjct: 38  GDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGL 97

Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
           NKAGKFP +++H ES+  K DE++
Sbjct: 98  NKAGKFPSVVTHGESLQSKSDEIR 121



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 23/29 (79%), Positives = 28/29 (96%)
 Frame = +2

Query: 167 KNYDPQKDKRFSGTVKLKYIPRPKMQVCV 253
           KNYDPQKDKRFSG+++LK+IPRP M+VCV
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCV 36


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  110 bits (264), Expect = 1e-24
 Identities = 50/66 (75%), Positives = 59/66 (89%)
 Frame = +3

Query: 504 QGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
           + T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG
Sbjct: 90  RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 149

Query: 684 PPQRLY 701
            PQR+Y
Sbjct: 150 KPQRVY 155



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 37/84 (44%), Positives = 46/84 (54%)
 Frame = +1

Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
           GDQ H DEA   ++P M                           SESLIKQIPR+LGPGL
Sbjct: 7   GDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGL 66

Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
           NKAGKFP +++H ES+  K DE++
Sbjct: 67  NKAGKFPSVVTHGESLQSKSDEIR 90


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  110 bits (264), Expect = 1e-24
 Identities = 50/66 (75%), Positives = 59/66 (89%)
 Frame = +3

Query: 504 QGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
           + T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG
Sbjct: 151 RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 210

Query: 684 PPQRLY 701
            PQR+Y
Sbjct: 211 KPQRVY 216



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 44/65 (67%), Positives = 55/65 (84%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 239 MQVCV 253
           M+VCV
Sbjct: 62  MKVCV 66



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 37/84 (44%), Positives = 46/84 (54%)
 Frame = +1

Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
           GDQ H DEA   ++P M                           SESLIKQIPR+LGPGL
Sbjct: 68  GDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGL 127

Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
           NKAGKFP +++H ES+  K DE++
Sbjct: 128 NKAGKFPSVVTHGESLQSKSDEIR 151


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 510 TIKFQMKKVLCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGP 686
           T+ + +++ +  S V VGH+  +  +L +N+   +  + S     + N+RS+++ ++ G 
Sbjct: 351 TVVYPLRRYMVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGK 410

Query: 687 P 689
           P
Sbjct: 411 P 411


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 546 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 689
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 116 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 226
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 584 LIRSHVHMANCYRKTQHLLHLELNGSLTSSIFCVMDSWWERRPGNLPALFKPGPNKRGI 408
           L+ +   +A C R  + L++++ N ++T    C +  +    P   P +  PG   RG+
Sbjct: 508 LVETMSVLARCPRLRKRLIYIQRNNTITIGNVCYIYEYVRDGPVPCPYVKPPGTPGRGV 566


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 29  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 196
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,964,011
Number of Sequences: 27780
Number of extensions: 389577
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)