Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00406
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 101 5e-22
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 101 5e-22
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 100 9e-22
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 98 5e-21
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 44 8e-05
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 42 6e-04
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 35 0.065
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.81
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.4
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.9
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.5
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.5
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 29 3.3
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 4.3
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 4.3
At1g48980.1 68414.m05491 hypothetical protein 24 6.8
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 28 7.5
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 101 bits (242), Expect = 5e-22
Identities = 43/67 (64%), Positives = 58/67 (86%)
Frame = +3
Query: 501 SQGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 680
++ T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 150 TKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTM 209
Query: 681 GPPQRLY 701
GPPQR++
Sbjct: 210 GPPQRIF 216
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/66 (63%), Positives = 55/66 (83%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 239 MQVCVL 256
M++C+L
Sbjct: 62 MKICML 67
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/84 (45%), Positives = 47/84 (55%)
Frame = +1
Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
GD QH +EA+ + + M SES+IKQIPRLLGPGL
Sbjct: 68 GDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGL 127
Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
NKAGKFP L+SHQES+ K++E K
Sbjct: 128 NKAGKFPTLVSHQESLEAKVNETK 151
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 101 bits (242), Expect = 5e-22
Identities = 43/67 (64%), Positives = 58/67 (86%)
Frame = +3
Query: 501 SQGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 680
++ T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 150 TKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTM 209
Query: 681 GPPQRLY 701
GPPQR++
Sbjct: 210 GPPQRIF 216
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/66 (63%), Positives = 55/66 (83%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 239 MQVCVL 256
M++C+L
Sbjct: 62 MKICML 67
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/84 (45%), Positives = 47/84 (55%)
Frame = +1
Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
GD QH +EA+ + + M SES+IKQIPRLLGPGL
Sbjct: 68 GDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGL 127
Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
NKAGKFP L+SHQES+ K++E K
Sbjct: 128 NKAGKFPTLVSHQESLEAKVNETK 151
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 100 bits (240), Expect = 9e-22
Identities = 42/67 (62%), Positives = 58/67 (86%)
Frame = +3
Query: 501 SQGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 680
++ T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 150 TKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTM 209
Query: 681 GPPQRLY 701
GPPQR++
Sbjct: 210 GPPQRIF 216
Score = 96.3 bits (229), Expect = 2e-20
Identities = 41/66 (62%), Positives = 54/66 (81%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 239 MQVCVL 256
M++C+L
Sbjct: 62 MKICML 67
Score = 74.1 bits (174), Expect = 9e-14
Identities = 38/84 (45%), Positives = 47/84 (55%)
Frame = +1
Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
GD QH +EA+ + + M SES+IKQIPRLLGPGL
Sbjct: 68 GDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGL 127
Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
NKAGKFP L+SHQES+ K++E K
Sbjct: 128 NKAGKFPTLVSHQESLESKVNETK 151
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 98.3 bits (234), Expect = 5e-21
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +3
Query: 501 SQGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 680
++ T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 151 TKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTM 210
Query: 681 GPPQRLY 701
GPP R++
Sbjct: 211 GPPNRVF 217
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/67 (58%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 235
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 236 KMQVCVL 256
KM++C+L
Sbjct: 62 KMKICML 68
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/84 (45%), Positives = 47/84 (55%)
Frame = +1
Query: 256 GDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGL 435
GD QH +EA+ + + M SES+IKQIPRLLGPGL
Sbjct: 69 GDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGL 128
Query: 436 NKAGKFPGLLSHQESMTQKIDEVK 507
NKAGKFP L+SHQES+ K++E K
Sbjct: 129 NKAGKFPTLVSHQESLESKVNETK 152
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 507 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671
G F M+ C ++ V + M D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 175 GAAMFFMRTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 507 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671
G+ F ++ C + VG + M E+ +NV ++N LV L W VRSLH+K
Sbjct: 195 GSAMFFIRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 34.7 bits (76), Expect = 0.065
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 540 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671
C V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 197 CSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 137 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 250
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 56 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 196
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 585 LAQNVHLSINFLVSLLKKH 641
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 585 LAQNVHLSINFLVSLLKKH 641
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 585 LAQNVHLSINFLVSLLKKH 641
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +3
Query: 507 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV-----SLLK--KHWQNVRSLH 665
G KF+M K L V +G + + + L +NV +N L+ L K K+ V + H
Sbjct: 327 GHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFH 386
Query: 666 MKSTMG 683
+ STMG
Sbjct: 387 LCSTMG 392
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 237 FGRGMYFSFTVPEKRLSFC 181
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 215 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 39
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At1g48980.1 68414.m05491 hypothetical protein
Length = 264
Score = 23.8 bits (49), Expect(2) = 6.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 599 HILSKLIRSHVHMANCYRKTQHLLHLELNGSLTS 498
H LS+ R+H+ N RK + ++NG L +
Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGELVN 99
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 638 FLEQ*HKEVDGKMHILSKLIRS 573
F+ Q E+ K+++LSK IRS
Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 617 EVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLTSSIF 489
E+ GKMH+LS+L +AN RKT + L N + T +F
Sbjct: 427 ELSGKMHVLSRL------LANLRRKTDDRIVLVSNYTQTLDLF 463
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,395
Number of Sequences: 28952
Number of extensions: 355314
Number of successful extensions: 868
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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