Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00404
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    31   0.14 
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    31   0.14 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.72 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   2.9  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   3.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.9  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +2

Query: 71  SHTHVSRNDEVRSLQ*DRNGQFQAEFLLLGKHTKIMALDKELLIISKRFRVSSQNAKSMW 250
           S  H SR   +  +      QF  +  L+ KH     +D+   +IS +   + Q   + W
Sbjct: 353 SRIHCSRLGVLLDMSPSETEQFLCD--LIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEW 410

Query: 251 GTNATDINSLIEYLESAYVTLAMVN 325
           G+N T++   +E +    +   M+N
Sbjct: 411 GSNITELLGKLEKVRQLIIKEEMMN 435


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +2

Query: 71  SHTHVSRNDEVRSLQ*DRNGQFQAEFLLLGKHTKIMALDKELLIISKRFRVSSQNAKSMW 250
           S  H SR   +  +      QF  +  L+ KH     +D+   +IS +   + Q   + W
Sbjct: 353 SRIHCSRLGVLLDMSPSETEQFLCD--LIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEW 410

Query: 251 GTNATDINSLIEYLESAYVTLAMVN 325
           G+N T++   +E +    +   M+N
Sbjct: 411 GSNITELLGKLEKVRQLIIKEEMMN 435


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 598 RTYHFAPSNKQALPSLCTPESPSRLRPNFGIVPFFII 488
           R + F P++KQA  S  TP++P   +  +  +P+ ++
Sbjct: 30  RLHSFVPTSKQAALSDITPDTPPAFKTPYSSLPYNLV 66


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 608 RGTLPNILKIATRNTMYIHAKTWL 679
           +GTLP+IL+  T ++ Y +   WL
Sbjct: 69  KGTLPSILRSTTGSSCYFYFLNWL 92


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 134 FQAEFLLLGKHTKIMALDKELLIISKRFRVSS 229
           F A+FL  G    + ALD++L +++K+  V S
Sbjct: 631 FVADFLRTGDECTLAALDEDLQLLTKKTTVRS 662


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 212 RFRVSSQNAKSMWGTNATDINSLIEYLESAYVTLAMVNYPFASSFLTPLPAQPVA 376
           +F  S ++AK    TN  D+ +     +SA  T+   NY    +  T  P +P++
Sbjct: 268 QFTKSDEHAKLAKPTNLADLQTATLEQKSAMFTMPDQNYTIEEAPPTAEPWEPIS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,117
Number of Sequences: 5004
Number of extensions: 72380
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)