Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00404
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 82 4e-16
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 63 4e-11
11_01_0351 - 2623653-2623795,2623939-2623988,2624086-2624165,262... 61 1e-09
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 38 0.012
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 33 0.19
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 32 0.57
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156... 30 2.3
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476... 29 4.0
07_01_0322 - 2258067-2258519,2258620-2258781,2258896-2259159,225... 29 5.3
02_02_0086 - 6647510-6648877 29 5.3
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 28 9.3
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 82.2 bits (194), Expect = 4e-16
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 GWDFQACTEMVMPVCSTGQNDMFEASPWNFTKYSEDCYKKYNVYPRENMARLEYGGD--- 699
GWD+QACTEMVMP+ S ++ MF A +N+T Y +DC + V PR E+GG
Sbjct: 392 GWDWQACTEMVMPM-SYSEDSMFPADKFNYTSYEKDCINSFGVEPRPQWITTEFGGHNIS 450
Query: 700 --LLQAASNIVFSYGLLDPWTAG 762
L + SNI+F GLLDPW+ G
Sbjct: 451 LVLERFGSNIIFFNGLLDPWSGG 473
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GMLAAYIRIKYPHLVAGAIAASAPIHMFPGMTKCDLFNRIVTANFKR-NFYCSENIQKSW 179
GMLAA++R+KYPH+ GA+A+SAPI F + +F +V+ +FKR + C + I+ SW
Sbjct: 222 GMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFYDLVSNDFKRESLSCFQTIKDSW 281
Query: 180 HLIRSYSSSVNGSEYLHKTLNLC 248
+ + + +G L KT +LC
Sbjct: 282 KALDAQGNGQDGLLKLSKTFHLC 304
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +2
Query: 278 LIEYLESAYVTLAMVNYPFASSFLTPLPAQPVAVVCQYLNQNLANESLLEGIAKAIDVYA 457
L ++L SAY LAMV+YP + F+ PLP P+ +C ++ S+LE I ++VY
Sbjct: 313 LSDWLSSAYSYLAMVDYPMPADFMMPLPGNPIKELCTKIDNQPDGTSILERIYAGVNVYY 372
Query: 458 NYGKKTKQCVDYKE 499
NY T C D +
Sbjct: 373 NY-TGTVDCFDLND 385
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GMLAAYIRIKYPHLVAGAIAASAPIHMFPGMTKCDLFNRIVTANFK-RNFYCSENIQKSW 179
GMLA++ R+KYPH+ GA+A+SAPI F +T F V+ ++K +F C I+ +W
Sbjct: 203 GMLASWFRLKYPHVTIGAVASSAPILQFDYITPWSSFYEAVSQDYKSESFNCFSVIKAAW 262
Query: 180 HLIRSYSSSVNGSEYLHKTLNLC 248
LI S+ G L KT C
Sbjct: 263 DLIDERGSTDAGLLQLSKTFRAC 285
Score = 56.4 bits (130), Expect(2) = 4e-11
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +1
Query: 529 GWDFQACTEMVMPVCSTGQNDMFEASPWNFTKYSEDCYKKYNVYPRENMARLEYGGDL 702
GW +QACTEMVMP+ + ++ MF + + S+DC++ Y V PR + EYGG++
Sbjct: 375 GWGWQACTEMVMPMTISNES-MFPPFTFTYEGKSDDCFQSYGVRPRPHWITTEYGGNV 431
Score = 48.0 bits (109), Expect = 8e-06
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Frame = +2
Query: 185 DKELLIISKRFRVSSQNAKSMWGTNATDINSLIEYLESAYVTLAMVNYPFASSFLTPLPA 364
D LL +SK FR + + KS++ S +L +A+V AMV+YP ++FL LPA
Sbjct: 272 DAGLLQLSKTFR-ACKTVKSVY--------SFRNWLWTAFVYTAMVDYPTPANFLMNLPA 322
Query: 365 QPVAVVCQYLNQNLANESLLEGIAKAIDVYANY-GKKTKQCVDYKEGDN 508
P+ +C+ ++ A +++ A +Y NY G +T C ++G++
Sbjct: 323 YPIKEMCKIIHGFPAGADIVDKAFAAASLYYNYTGDQT--CFQLEDGED 369
Score = 29.1 bits (62), Expect(2) = 4e-11
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 700 LLQAASNIVFSYGLLDPWTAG 762
L + SNI+FS G+ DPW+ G
Sbjct: 466 LKRFGSNIIFSNGMRDPWSRG 486
>11_01_0351 -
2623653-2623795,2623939-2623988,2624086-2624165,
2624262-2624585,2625164-2625281,2629019-2629062
Length = 252
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Frame = +1
Query: 529 GWDFQACTEMVMPVC-STGQNDMFEASPWNFTKYSEDCYKKYNVYPRENMARLEYGGD-- 699
GW +QACTE++M + G +F P+N T Y C V PR + + +GG
Sbjct: 105 GWTWQACTEVIMTMSYGIGNATVFPPDPFNLTAYLAGCLATTGVPPRPHWIQSYFGGYDI 164
Query: 700 ---LLQAASNIVFSYGLLDPWTAG 762
L ++ SNI+F GL DPW+AG
Sbjct: 165 RNVLKRSGSNIIFFNGLRDPWSAG 188
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 257 NATDINSLIEYLESAYVTLAMVNYPFASSFLTPLPAQPVAVVCQYLNQNLANESLLEGIA 436
N DI L+E A + +M++YP S+FLT LPA PV +C+ +++ + + I
Sbjct: 17 NVDDIPGLVE---KALIYGSMMDYPTPSNFLTSLPAYPVREICRAIDKPTSGNDTVSRIK 73
Query: 437 KAIDVYAN 460
A+ +Y N
Sbjct: 74 DAMTIYYN 81
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 37.5 bits (83), Expect = 0.012
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 532 WDFQACTEMVMPVCSTGQNDMFEASPWNFTKYSED-CYKKYN--VYPRENMARLEYGGDL 702
W +Q C+E+ + +ND ++ + T+Y D C + VYP M L YGG
Sbjct: 362 WWYQVCSEVAYFQVAP-KNDSVRSAKID-TRYHLDLCRNVFGEGVYPDVFMTNLYYGGTR 419
Query: 703 LQAASNIVFSYGLLDPW 753
+ A S IVF+ G DPW
Sbjct: 420 I-AGSKIVFANGSQDPW 435
Score = 31.9 bits (69), Expect = 0.57
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 3 GMLAAYIRIKYPHLVAGAIAASAPI 77
G L+A+ R+K+PHL G++A+S +
Sbjct: 203 GALSAWFRLKFPHLTCGSLASSGVV 227
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 666 AWIYIVFLVAIFRIFGKVPRRRFEHII-LPR 577
A + ++FLV IF +F PRR FE I+ LPR
Sbjct: 48 ASVLVLFLVGIFCVFRAAPRREFEQILRLPR 78
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 31.9 bits (69), Expect = 0.57
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 3 GMLAAYIRIKYPHLVAGAIAASAPI 77
G L+A+ R+K+PHL G++A+S +
Sbjct: 184 GALSAWFRLKFPHLTCGSLASSGVV 208
>08_01_0185 +
1558580-1558755,1558848-1559737,1559828-1559919,
1560018-1560086,1560218-1560316
Length = 441
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 547 TPESPSRLRPNFGIVPFFIIYTLLGFLPIISVNVYSFGNSLE 422
TPE PS+ G+V +II L + P+ V ++FGN ++
Sbjct: 250 TPEKPSKKPMWKGVVVAYIIVALC-YFPVALVGYWAFGNHVD 290
>01_01_0633 -
4767914-4768020,4768057-4768085,4768590-4768745,
4768835-4768983,4769106-4769638,4769900-4770068,
4770255-4770347,4770641-4770698,4771392-4771471,
4771548-4771715,4772090-4772242,4772756-4772884,
4772996-4773085,4773990-4774129,4774683-4774814,
4774916-4775087
Length = 785
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 108 LFNRIVTANFKRNFYCSENIQKSWHLIRSYSSSVNGSEYLH 230
LF ++ KRN N ++HL+R+Y++ ++H
Sbjct: 601 LFRLVILEGQKRNIIYGSNGMSAFHLVRNYNTHAPEHSWIH 641
>07_01_0322 -
2258067-2258519,2258620-2258781,2258896-2259159,
2259196-2259294,2259723-2260131,2260223-2260350,
2261115-2261181,2262766-2262838,2262911-2263130
Length = 624
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 26 DKVSPPSGRSYSRLSSHTHVSRNDEVRSLQ*DRNGQF 136
D+++ GRSY+ + H +S+N R+L R+G+F
Sbjct: 364 DRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRF 400
>02_02_0086 - 6647510-6648877
Length = 455
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 313 SYGELSLCL*LSDAVTSAACGRGLSIFKSKFGKRI 417
S G S + D TS+ACG G+SI+ K +R+
Sbjct: 10 SNGHASSSSSMLDDDTSSACGGGMSIYYQKINQRV 44
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 595 FEASPWNF---TKYSEDCYKKYNVYPRENMARLEYGGDLLQA 711
FE + NF + S CY +YN +PR ++ +Y GD+ A
Sbjct: 315 FEITATNFGLAQRSSLICYLRYNAFPRRDLH--DYSGDISSA 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,590,261
Number of Sequences: 37544
Number of extensions: 463848
Number of successful extensions: 1089
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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