Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00404
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 511 GIVPFFIIYTLLGFLPIISVNVYS 440
           GIV +FI+  L  F+P ++ ++ S
Sbjct: 440 GIVTYFIVRALKPFIPAVTKSLAS 463


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 529 RLRPNFGIVPFFI--IYTLLGFLPIISVNV 446
           RLRPNFG  P  +    T+  F  I  VN+
Sbjct: 51  RLRPNFGGEPLLVGMDLTIASFDAISEVNM 80


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 616 SSTETLRTYHFAPSNKQALPSLCTPESPSR 527
           + T  L+      SNK+   +L T E PSR
Sbjct: 326 ADTRPLKKEPITQSNKRTAGNLATREHPSR 355


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 505 VPFFIIYTLLGFLPI 461
           +PFFI+Y    F+P+
Sbjct: 320 LPFFILYLATPFVPV 334


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 505 VPFFIIYTLLGFLP 464
           +PFF++Y ++ F P
Sbjct: 341 LPFFLMYVIVPFCP 354


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 505 VPFFIIYTLLGFLP 464
           +PFF++Y ++ F P
Sbjct: 341 LPFFLMYVIVPFCP 354


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 675 HVFAWIYIVFLVAIFRIFGK 616
           HV  WI   FL+   R +G+
Sbjct: 59  HVMIWIGFGFLMTFLRRYGQ 78


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 505 VPFFIIYTLLGFLP 464
           +PFF++Y ++ F P
Sbjct: 341 LPFFLMYVIVPFCP 354


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 244 YVGHQRDRYQFLNRIFR 294
           ++ HQ DRY  L R +R
Sbjct: 19  FIRHQSDRYSKLKRNWR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,744
Number of Sequences: 438
Number of extensions: 5438
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)