Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00403
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 139 3e-34
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 138 8e-34
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 138 1e-33
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.077
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 28 1.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 28 1.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.8
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 3.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 5.0
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 6.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 139 bits (337), Expect = 3e-34
Identities = 61/85 (71%), Positives = 70/85 (82%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
P W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKV+G
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRTD T+P GFMDV+S+EKT E F
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHF 99
Score = 137 bits (332), Expect = 1e-33
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
RL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+
Sbjct: 100 RLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I+L++ T KI FIKF++ M+T
Sbjct: 160 IKLNLETNKIESFIKFDTSAQVMVT 184
Score = 109 bits (262), Expect = 4e-25
Identities = 48/75 (64%), Positives = 63/75 (84%)
Frame = +2
Query: 509 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 688
GGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGV 244
Query: 689 RLTIAEERDKRIAAK 733
+L+I EERD+R A K
Sbjct: 245 KLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 138 bits (334), Expect = 8e-34
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
P W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKV+G
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRTD T+P GFMDV+S++KT E F
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHF 99
Score = 137 bits (332), Expect = 1e-33
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
RL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+
Sbjct: 100 RLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I+L++ T KI FIKF++ M+T
Sbjct: 160 IKLNLETNKIESFIKFDTSAQVMVT 184
Score = 109 bits (262), Expect = 4e-25
Identities = 48/75 (64%), Positives = 63/75 (84%)
Frame = +2
Query: 509 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 688
GGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGV 244
Query: 689 RLTIAEERDKRIAAK 733
+L+I EERD+R A K
Sbjct: 245 KLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 138 bits (333), Expect = 1e-33
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
P W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLI+V+G
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRTD T+P GFMDV+S+EKT E F
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHF 99
Score = 137 bits (332), Expect = 1e-33
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
RL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+
Sbjct: 100 RLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I+L++ T KI FIKF++ M+T
Sbjct: 160 IKLNLETNKIESFIKFDTSAQVMVT 184
Score = 110 bits (264), Expect = 2e-25
Identities = 48/75 (64%), Positives = 63/75 (84%)
Frame = +2
Query: 509 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 688
GGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGV 244
Query: 689 RLTIAEERDKRIAAK 733
+L+I EERD+R A K
Sbjct: 245 KLSITEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.3 bits (70), Expect = 0.077
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -3
Query: 664 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD--GAHTPQVTASV 506
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+ G T +
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGRLLHITTVNE 946
Query: 505 IIHKFPDS 482
++H P S
Sbjct: 947 MMHNVPSS 954
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 560 DVSRGTRWCPHAPSYGLRDHTQVPRLKLDEVHNLRSC 450
D+++ TRW P GL+D +PR D+VH LR C
Sbjct: 1201 DLAQLTRWSP-MDIQGLQD---IPRPLRDKVHILRDC 1233
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 449 RNYEDYGLHQV*VWELVYDHGGRNLGRVGTIVSRERHPGSFDIVHIK 589
+ Y + H VW++ Y H GR L S+++ FD+V++K
Sbjct: 204 KEYHVFHDHSDEVWQISYSHNGRYLAS----ASKDKTAIIFDVVNLK 246
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 419 QSQRFHPVRHRNYED 463
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 213 SSRISRVSPNFPFN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 58
SS+ + P+ P + +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 386 WPHHPLPRPTYQSQR 430
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Frame = +1
Query: 73 RECLPLVIFLRNRLK-YALTGNEVLKIVKQR----LIKVEGKVRTDPTY--PAGFMDVVS 231
+ECLP F +N+L Y L + VL++ K+R LI E D + + D++S
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLVLIHCESLQSFDSFFAQKLKYADLIS 110
Query: 232 IEKTNELFV 258
+ +E+F+
Sbjct: 111 SDNVHEIFL 119
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 389 PHHPLPRPTYQSQRFHPVRHRNYEDY 466
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 565 AGMSLAGHDGAHTPQVTASVIIHKFPDSNLMKSI 464
+G+S + D A+TP + A I+H + + + S+
Sbjct: 19 SGVSASLSDPANTPTILADDIVHGYTPATYLSSV 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,870
Number of Sequences: 5004
Number of extensions: 71761
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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