Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00403
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   2e-38
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)                  31   1.3  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.8  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   3.1  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.4  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   5.4  
SB_7143| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   7.1  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  156 bits (379), Expect = 2e-38
 Identities = 71/85 (83%), Positives = 77/85 (90%)
 Frame = +1

Query: 1   PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
           PK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK++G
Sbjct: 439 PKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDG 498

Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
           KVRTD TYPAGFMDVV+I+KT E F
Sbjct: 499 KVRTDTTYPAGFMDVVTIDKTGENF 523



 Score =  131 bits (316), Expect = 7e-31
 Identities = 56/84 (66%), Positives = 71/84 (84%)
 Frame = +3

Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
           RL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP IKVND+
Sbjct: 524 RLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDT 583

Query: 435 IQLDIATTKIMDFIKFESGNLCMI 506
           + +DI T K++D+IKF++GN+ M+
Sbjct: 584 VVIDIKTGKVIDYIKFDTGNMAMV 607



 Score =  128 bits (309), Expect = 5e-30
 Identities = 54/75 (72%), Positives = 66/75 (88%)
 Frame = +2

Query: 509 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 688
           GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+
Sbjct: 609 GGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGV 668

Query: 689 RLTIAEERDKRIAAK 733
           RL+IAEERD+RIA K
Sbjct: 669 RLSIAEERDRRIAEK 683


>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 568 GAGMSLAGHDGAHTPQVTASVIIHKFPDSNL 476
           G   S  GH G++ PQ +  V+I  FP +NL
Sbjct: 233 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 263


>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
          Length = 565

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 568 GAGMSLAGHDGAHTPQVTASVIIHKFPDSNL 476
           G   S  GH G++ PQ +  V+I  FP +NL
Sbjct: 380 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 410


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/69 (21%), Positives = 38/69 (55%)
 Frame = +1

Query: 115 KYALTGNEVLKIVKQRLIKVEGKVRTDPTYPAGFMDVVSIEKTNELFV*SMMLRADSQST 294
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF  + +  +  + T
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFN-TFIESSTRKRT 654

Query: 295 VSPLRRLST 321
           VS  R+L++
Sbjct: 655 VSVNRQLTS 663


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 288 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 467
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 468 DFIKFESGNLCM 503
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 498 CMITEAVTWGVWAPSCPARDIPAPSTLCT 584
           C  T    WG+    CPA+D  A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 102 EES--SEVCFDRKRSPENCE 155
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 622 EQRVHNRQGHEGVHLAAARQGHPPHHRRGTG 714
           +Q  H+  G+   H      GH  HHRR +G
Sbjct: 41  DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 623 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 736
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 623 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 736
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +1

Query: 529 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 702
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R    PH+R
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74


>SB_7143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 604 HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAHRSQGRR 741
           H +H+ E   H R         A R+  P  H+R T    ++Q +R
Sbjct: 24  HAQHKCEPSKHKRSTGVNRQTQAQRKCEPSEHKRSTSVNRQTQAQR 69


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +1

Query: 628 RVHNRQG-----HEGVHLAAARQGHPPHHRRGTGQAHR 726
           +VHN +G      EGV    +R GH  H  RG+   HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +1

Query: 535 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 705
           HH  P     +LRH  H+  +  H RH      H+R  H   H       H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 179 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 63
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 601 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAHRS 729
           THL  E  + +  R+   G  +AAA +   P + R  G  +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 723 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 562
           + LSR    + R+P P     ++ +P P   T + +   +CPV  +  TMS  P
Sbjct: 48  LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,088,165
Number of Sequences: 59808
Number of extensions: 628889
Number of successful extensions: 1962
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)