Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00403
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 125 4e-29
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 40 0.002
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 34 0.13
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 4.7
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 4.7
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.2
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 28 8.2
U21308-5|AAB93318.1| 258|Caenorhabditis elegans Warthog (hedgeh... 28 8.2
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 125 bits (301), Expect = 4e-29
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
P WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+ QR+++V+G
Sbjct: 14 PSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDG 73
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRT +P GFMDVV+IE+TNE F
Sbjct: 74 KVRTCHKFPTGFMDVVAIERTNEYF 98
Score = 120 bits (290), Expect = 8e-28
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = +2
Query: 494 LVYDHGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 673
L Y GGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLP 238
Query: 674 RGKGIRLTIAEERDKRIAAK 733
G GIRL+IAEERDKR+A K
Sbjct: 239 TGAGIRLSIAEERDKRMAQK 258
Score = 112 bits (270), Expect = 2e-25
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
R++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPDP +KVND+
Sbjct: 99 RMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDT 158
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I +I+T KI D +KFE GNL +T
Sbjct: 159 IVFNISTQKITDSVKFEPGNLAYVT 183
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 702
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 703 RGTGQAHRSQGRRA 744
GT H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +1
Query: 535 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTG 714
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 715 QAHRS 729
+ H +
Sbjct: 460 EHHHA 464
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 535 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 699
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +1
Query: 574 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGH--PPHHRRGTGQAHRSQG 735
H AH HG H RH E H+ H G H GH HH H S G
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGHHGEHHHAPAHHGHHESHG 446
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Frame = +1
Query: 523 GACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAARQGHPP 693
G+ G H T L H H G HGTH H H+ HE G H A H
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDD 708
Query: 694 ---HHRRGTGQAH 723
HH G H
Sbjct: 709 KENHHHHGHHSKH 721
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = +1
Query: 535 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTG 714
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 715 QAHRSQG 735
AH G
Sbjct: 690 GAHHEHG 696
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/65 (27%), Positives = 20/65 (30%)
Frame = +1
Query: 535 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTG 714
HH P H H HG H H H G G H H P H G
Sbjct: 509 HHHAPAHHGH---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHG 565
Query: 715 QAHRS 729
+ H +
Sbjct: 566 EHHHA 570
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Frame = +1
Query: 535 HHRVPRETSRLLRHCAHQGLHGT----HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 702
HH E H H G HG+ H HE H+ H G H H HH
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHH--GEHGVHHGHHG 617
Query: 703 RGTGQAHRSQG 735
G G H G
Sbjct: 618 AGYGAHHGHHG 628
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 532 GHHRVPRETSRLLRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 708
GHH H H G HG H H H+ GH G H A H HH
Sbjct: 588 GHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH--GHHGAHHHHA--PHHEHHEHH 643
Query: 709 TGQAHRSQG 735
H S G
Sbjct: 644 GDHHHGSHG 652
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +1
Query: 580 AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAH 723
AH G HG H H H H G H + H HH AH
Sbjct: 622 AHHGHHGAHHHHAPH---HEHHEHHGDHHHGSHGVHHGHHGTHHSLAH 666
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Frame = +1
Query: 580 AHQGLHGTHLRHEVEQRVHN----RQGHEGVHLAAARQGHPPHHRRGTGQAHRSQGRRA 744
AH G HG H H H+ GH G H GH H H + A
Sbjct: 514 AHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEH--GTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 580 AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 708
AH G HG H H H GH G H GH H G
Sbjct: 559 AHHGHHGEH--HHAPAH-HGHHGHHGSH--GVHHGHHESHGHG 596
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/52 (26%), Positives = 17/52 (32%)
Frame = +1
Query: 574 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAHRS 729
H H G H +H H G GVH G+ HH H +
Sbjct: 583 HGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHA 634
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Frame = +1
Query: 532 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 699
G H P H H G H H HE H+ H G H H P H
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHH---GEHHHAPAH 467
Query: 700 RRGTGQAHRS 729
G+ H +
Sbjct: 468 HGHHGEHHHA 477
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Frame = +1
Query: 580 AHQGLHGTHLRHEVEQRVH----NRQGHEGV-HLAAARQGHPPHHRRGTGQAH 723
AH G HG H H GH G H A A GH H GT H
Sbjct: 501 AHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGH--HGEHGTHHGH 551
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Frame = +1
Query: 535 HHRVPRETSRLLRHCAHQGLHG---THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 705
HH P H H G HG + H H+ H G H G H
Sbjct: 532 HHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHE 591
Query: 706 GTGQAHRS 729
G H +
Sbjct: 592 SHGHGHHA 599
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = +1
Query: 574 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGTGQAHRSQG 735
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.40
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 574 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 699
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 21.4 bits (43), Expect(2) = 0.40
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +1
Query: 688 PPHHRRGTGQAHRSQGRRA 744
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 276 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 407
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 722 CACPVPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 603
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 392 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 475
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +1
Query: 559 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGTGQAHRSQG 735
+R RH H+G HG ++H H H R G H P+ H +
Sbjct: 84 ARRRRHHNHEGHHGNDMKHRENMDRKKHGTHVDHHGRVRRNGDHDPNDPNVDHTGHNHRV 143
Query: 736 RRAV 747
+R++
Sbjct: 144 KRSI 147
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 722 CACPVPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 603
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 722 CACPVPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 603
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 722 CACPVPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 603
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 686 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 597
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 433 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 269
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 556 SLAGHDGAHTPQVTASVIIHKFPDSNLMKSII 461
SL GH G TP+ + H P L+ SI+
Sbjct: 462 SLGGHSGYSTPERSVEGFYHALPQFGLLGSIL 493
>U21308-5|AAB93318.1| 258|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 10 protein.
Length = 258
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 626 CSTSWRRCVPWSP*CAQCRRSRDVSRGTRWCPHAPSYGLRDHTQVPRLKL 477
C +RC+ CR DV G RW P+ S LR T + K+
Sbjct: 54 CGEVGKRCIDDQ---TSCRAETDVFSGMRWAPNGESILLRCCTMHAKNKI 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,440
Number of Sequences: 27780
Number of extensions: 441186
Number of successful extensions: 1466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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