Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00403
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 141 5e-34
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 141 5e-34
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 141 5e-34
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 33 0.20
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.83
At1g29760.1 68414.m03639 expressed protein 31 0.83
At1g15780.1 68414.m01893 expressed protein 30 1.4
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.5
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.3
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.3
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.3
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.4
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 4.4
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 7.7
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 28 7.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 141 bits (341), Expect = 5e-34
Identities = 64/85 (75%), Positives = 73/85 (85%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
PK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+V+G
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRTD TYPAGFMDVVSI KTNE F
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENF 99
Score = 123 bits (297), Expect = 1e-28
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
RL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+
Sbjct: 100 RLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I+LD+ KI++FIKF+ GN+ M+T
Sbjct: 160 IKLDLEANKIVEFIKFDVGNVVMVT 184
Score = 116 bits (280), Expect = 1e-26
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +2
Query: 485 VWELVYDHGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 664
V +V GGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 665 SLPRGKGIRLTIAEERDKRIAAKVAA 742
SLP+GKGI+LTI EE KR+A++ AA
Sbjct: 237 SLPKGKGIKLTIIEEARKRLASQQAA 262
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 141 bits (341), Expect = 5e-34
Identities = 64/85 (75%), Positives = 73/85 (85%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
PK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+V+G
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRTD TYPAGFMDVVSI KTNE F
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENF 99
Score = 123 bits (296), Expect = 1e-28
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
RL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+
Sbjct: 100 RLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I+LD+ KI++FIKF+ GN+ M+T
Sbjct: 160 IKLDLEENKIVEFIKFDVGNVVMVT 184
Score = 116 bits (280), Expect = 1e-26
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +2
Query: 485 VWELVYDHGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 664
V +V GGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 665 SLPRGKGIRLTIAEERDKRIAAKVAA 742
SLP+GKGI+LTI EE KR+A++ AA
Sbjct: 237 SLPKGKGIKLTIIEEARKRLASQQAA 262
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 141 bits (341), Expect = 5e-34
Identities = 64/85 (75%), Positives = 73/85 (85%)
Frame = +1
Query: 1 PKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVEG 180
PK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+V+G
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 181 KVRTDPTYPAGFMDVVSIEKTNELF 255
KVRTD TYPAGFMDVVSI KTNE F
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENF 99
Score = 123 bits (296), Expect = 1e-28
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 255 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 434
RL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+
Sbjct: 100 RLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
Query: 435 IQLDIATTKIMDFIKFESGNLCMIT 509
I+LD+ KI++FIKF+ GN+ M+T
Sbjct: 160 IKLDLEENKIVEFIKFDVGNVVMVT 184
Score = 115 bits (276), Expect = 4e-26
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = +2
Query: 485 VWELVYDHGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 664
V +V GGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 665 SLPRGKGIRLTIAEERDKRIAAKVA 739
SLP+GKGI+LTI EE KR++A+ A
Sbjct: 237 SLPKGKGIKLTIIEEARKRLSAQQA 261
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 583 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAHR 726
HQG+HG + H ++ + + H+G+H + GH H+ G G H+
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQ 203
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 583 HQGLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAHR 726
HQG HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 583 HQGLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGTGQAH 723
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 83 KHSRNLWGPVDGLGAYTPPSLSNIHAL 3
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 194 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 102
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 682 LAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEG 566
L ARQ+ +L+ + D + +G VSRG+ H+++G
Sbjct: 865 LQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 648 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 553
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 648 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 553
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 173 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 57
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 648 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 553
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 512 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 670
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 679 QGHPPHHRRGTGQAHRSQG 735
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 648 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 553
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 688 DALAARQRDVRLRALADYEHVVQPRGEGVSRG 593
+ LA QRDVRL L E V P E + G
Sbjct: 158 EVLAFIQRDVRLNGLRQVETPVSPEQEAIHHG 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,467
Number of Sequences: 28952
Number of extensions: 414917
Number of successful extensions: 1283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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