Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00399
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    45   8e-04
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   1.5  
UniRef50_Q7NF85 Cluster: Gll3641 protein; n=1; Gloeobacter viola...    33   2.0  
UniRef50_Q0KIR5 Cluster: Putative uncharacterized protein; n=1; ...    33   2.6  
UniRef50_Q8GW81 Cluster: Putative uncharacterized protein At4g16...    33   3.5  
UniRef50_Q57TT5 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12...    32   4.6  
UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole...    32   6.0  
UniRef50_Q2P5X4 Cluster: ISXo1 transposase; n=13; Proteobacteria...    32   6.0  
UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1...    32   6.0  
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ...    31   8.0  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 44.8 bits (101), Expect = 8e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = +3

Query: 129 IYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGAL 260
           IYGTGGLLTP+VAP+L                  YYGN+VAG++
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 65  QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 178
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


>UniRef50_Q7NF85 Cluster: Gll3641 protein; n=1; Gloeobacter
           violaceus|Rep: Gll3641 protein - Gloeobacter violaceus
          Length = 269

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 119 RCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRRIVSQLTAA 280
           RC  ++ +  +D + GS   F+ S   G+ H R C  +      RRI   L AA
Sbjct: 23  RCARLFRYLYLDRLGGSGEGFEASEQQGQAHRRFCRLVELAAQNRRIEPLLAAA 76


>UniRef50_Q0KIR5 Cluster: Putative uncharacterized protein; n=1;
           Solanum demissum|Rep: Putative uncharacterized protein -
           Solanum demissum (Wild potato)
          Length = 189

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 336 DVENG*CLASPHGVGATMAAAVNCDTMRRPLNFRSMLVQQRLC 208
           D + G C   PH   + + A++N  T+ R ++F S++   RLC
Sbjct: 82  DADTGCCGVCPHIYLSILEASINSQTVSRSVSFESLIHLSRLC 124


>UniRef50_Q8GW81 Cluster: Putative uncharacterized protein
           At4g16141; n=2; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein At4g16141 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 197

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 363 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMRRPL 244
           K E     SDV+NG C +S  G G T    V+C T R PL
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGTSRTPL 49


>UniRef50_Q57TT5 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 394

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 77  EHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSG---RKHSRCCTSILRKFS 247
           E    S ++G     C N+  WG  DS  G  ARF +   S    R    CC  ++    
Sbjct: 323 EPSPHSYVTGVDASECSNLGEWGEDDS-DGGAARFVVGSKSSQMCRMCRECCGRLIA--L 379

Query: 248 GRRIVSQL 271
           GRR+  +L
Sbjct: 380 GRRVAERL 387


>UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12;
           Bacilli|Rep: Pyrrolidone-carboxylate peptidase -
           Bacillus subtilis
          Length = 215

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  LRIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSIS 163
           L + R   K+KEHG  + +S   G   CN   +G +D IS
Sbjct: 117 LPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHIS 156


>UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF3766,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 328

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 174 AREPLMESTDPQCHILQHRRPRLPLMQLE 88
           A +PL   T+P+  +LQ+RRP+L L  L+
Sbjct: 5   AEQPLSLRTEPKLRVLQYRRPKLELQLLK 33


>UniRef50_Q2P5X4 Cluster: ISXo1 transposase; n=13;
           Proteobacteria|Rep: ISXo1 transposase - Xanthomonas
           oryzae pv. oryzae (strain MAFF 311018)
          Length = 322

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 315 LASPHGVGATMAAAVNCDTMRRPLNFRS-MLVQQRLCFLPLFPLS*NRAREPLMEST 148
           L   HG+ A M  AVN    R+  + RS  +V   L   P    + +RAR+P M  T
Sbjct: 110 LLETHGIAARMLEAVNAHLSRKGQSLRSGTIVDATLIAAPSSTKNADRARDPEMHQT 166


>UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1;
            n=2; Caenorhabditis|Rep: Laminin related. see also
            lmb-protein 1 - Caenorhabditis elegans
          Length = 1067

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 92   SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 196
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
           Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
           - Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 504

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 318 CLASPHGVGATMAAAVNCDTMRRPLNFRSMLVQQRLCFLPLFPL 187
           CL SP+     +   VN D+M+R + F   +V  R C L L  L
Sbjct: 317 CLTSPNTKDTRLIQIVNLDSMKRVIIFTRTVVHTRRCCLMLLNL 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,378,130
Number of Sequences: 1657284
Number of extensions: 7209127
Number of successful extensions: 16062
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16000
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)