Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00395
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   1.8  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    24   7.1  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    23   9.4  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 121 PTCCTRCSSCFWSTP 165
           PTCC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 134 VQQVGRYLQPMKPLAPV 84
           V  +G ++Q +KPLAP+
Sbjct: 655 VSDLGNHMQSLKPLAPL 671


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 46  WFSWYHSLFLGLL 8
           WFSW +SLF  L+
Sbjct: 481 WFSWANSLFAELI 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 999,134
Number of Sequences: 5004
Number of extensions: 12574
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)