Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00395
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  27   3.8  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.8  
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 176 LLEQGVLQKQELQRVQQVGRYLQPMKPLAPVFHSSL 69
           L  QGV+Q+ E      VGRY +P   L P   S+L
Sbjct: 430 LESQGVVQRPEDIGFADVGRYSKPQPSLMPNVDSTL 465


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 145  SCFWSTPCSRXLVCPGTR*VEHNCRRTSRRHRSA 246
            +C W+ P    +  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 79  IPVFMDRSNYFWFSWYHSLFLGLLF 5
           IP+ +D S  F+F W  ++ LG+++
Sbjct: 270 IPLVLDPSGTFYFLWLLTVSLGVIY 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,594,903
Number of Sequences: 59808
Number of extensions: 104834
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)