Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00395
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    26   5.4  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    26   5.4  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    26   5.4  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    25   9.5  
At1g71680.1 68414.m08271 lysine and histidine specific transport...    25   9.5  

>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 185 QTXLLEQGVLQKQELQRVQQVGRYLQPMKPLAPVFHSSLHGQE 57
           Q  LLEQ  +Q Q LQR+QQ  +  Q + P + + H  L  Q+
Sbjct: 741 QQSLLEQPHIQFQLLQRLQQ-QQQQQFLSPQSQLPHHQLQSQQ 782


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 185 QTXLLEQGVLQKQELQRVQQVGRYLQPMKPLAPVFHSSLHGQE 57
           Q  LLEQ  +Q Q LQR+QQ  +  Q + P + + H  L  Q+
Sbjct: 740 QQSLLEQPHIQFQLLQRLQQ-QQQQQFLSPQSQLPHHQLQSQQ 781


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 185 QTXLLEQGVLQKQELQRVQQVGRYLQPMKPLAPVFHSSLHGQE 57
           Q  LLEQ  +Q Q LQR+QQ  +  Q + P + + H  L  Q+
Sbjct: 741 QQSLLEQPHIQFQLLQRLQQ-QQQQQFLSPQSQLPHHQLQSQQ 782


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 24   RLWYQLNQK*LLLSMKTGMKHWS 92
            R W QL+QK L LS   G + WS
Sbjct: 1127 RGWAQLSQKALNLSKMVGKRMWS 1149


>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GB: AAC49885 GI:2576361 from (Arabidopsis
           thaliana); contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 434

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -3

Query: 115 IFSP*SHWLQCFIPVFMDR----SNYFWFSWYHSLFL 17
           +FS  S++L C I + M R    S ++W SW    FL
Sbjct: 388 VFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVSLSFL 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,325,481
Number of Sequences: 28952
Number of extensions: 68126
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)