Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00394
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.3  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   5.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.5  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 127 YGAGYELPADLKTQTAFST 183
           YGAGY+L A  K  T  ST
Sbjct: 78  YGAGYDLAARRKNATREST 96


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 70  ENSDDIQNLERELGKNGLY 126
           +N D ++ LE  L K+GL+
Sbjct: 142 DNQDHLRRLEMSLEKSGLF 160


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +2

Query: 551 SHHVSWQLISLWEDNNVIFKILN------TAYEMYLKLDVNVDSY 667
           S  ++W++   W   NV+ KI+       T    Y+ + +++D Y
Sbjct: 101 STDIAWRITVAWYAGNVLCKIIRFLQAVVTYSSTYVLVALSIDRY 145


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 588 SQREMSCQLTWWLV*SFPSPQVRRSLYRQ 502
           ++  + C L W++   F SP +  + Y+Q
Sbjct: 185 TRASLICLLAWFIAALFTSPMLVIAEYKQ 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,690
Number of Sequences: 336
Number of extensions: 2769
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)