Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00394
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.66 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   4.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   4.6  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   8.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 379 TRATRTSSKITSRANSNSYSTNR*LSSSANIT 474
           T AT TSS ++S A SNS +++   SSS N T
Sbjct: 204 TSATATSSSLSSTAASNSATSSSLASSSLNST 235



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANIT 474
           S TS    ++ TSS ++S A SNS +++   SSS N T
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 653 NVDSYGDRKTWGSNGSS 703
           N  SYG   T+GSNGSS
Sbjct: 72  NYGSYGASNTYGSNGSS 88


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 454 LIICWSSMSWNSLGK*SSTMSLWP 383
           +I C+SS  W  LG  SS  S WP
Sbjct: 779 IIPCFSSECWLLLGHNSSVYSNWP 802


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 261 VKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWH 380
           +K  R  ++++ SD+C DV+S L    I  A +   K+++
Sbjct: 83  IKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,630
Number of Sequences: 5004
Number of extensions: 47958
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)