Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00394
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0410 + 2928382-2930973                                           29   4.8  
02_05_1113 + 34207997-34208380                                         29   4.8  
03_06_0754 - 36025579-36027000                                         28   6.4  

>06_01_0410 + 2928382-2930973
          Length = 863

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 210 NQQPLVQLGYGRRLHNAVKTVRSLVDNQGSDVCRDVVSRLVSQGIK 347
           N   L +LG G  +  ++K    LVD+ G D+  D  + L+    K
Sbjct: 279 NHVDLAKLGMGTTIECSMKGKNQLVDDDGKDMANDERTELIEVDTK 324


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 129 WSRVRTARRLEDPDGIQHEDGLCRRNVNQQP 221
           W R RTARR    DG   E+G C R   + P
Sbjct: 45  WRRSRTARRTPVADGDGSEEGGCGRGRRRGP 75


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 541 RLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLETGRER 657
           R H+   Q+A   +L     D+ D EH +R +L+T   R
Sbjct: 145 RAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQTSSSR 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,927
Number of Sequences: 37544
Number of extensions: 348596
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)