Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00394
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             35   0.057
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)           31   0.70 
SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              30   2.1  
SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)              29   2.8  
SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +1

Query: 352 PCRSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANIT 474
           P  S T+CG  AT+T+S I+  A+++  +T   +SS  N+T
Sbjct: 730 PTVSTTTCGAAATKTTSAISQGASTSLQATTHSVSSPTNVT 770


>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
          Length = 291

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +1

Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAIQ 513
           S+T  GT    T+   T++ ++  Y+T + +++ +  T+K +NW+L   ++
Sbjct: 241 SKTQHGTTQHSTTQHSTTQYSTTQYNTTQHVTTRSASTVKHNNWLLNSLVK 291


>SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 639 KYISYAVFSILNITLLSSQREMSCQLTWWLV*SFPSP 529
           +YI   + +   ++  +S   + CQ+ WWL   +PSP
Sbjct: 36  QYIGLQLLASSGVSSRASDIHIGCQIVWWLDDRYPSP 72


>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 476 SSSQTGC*RWRYNDRLTWGDGKDYTSHHVSWQLISLWEDNNVI--FKILNT 622
           SS  +GC R+  ND+ TW DG       +   L ++ + N ++   KIL T
Sbjct: 336 SSGSSGCLRFYVNDKRTW-DGARVECRRIGGDLATIHDSNALVDTSKILET 385


>SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)
          Length = 421

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 476 SSSQTGC*RWRYNDRLTWGDGKDYTSHHVSWQLISLWEDNNV--IFKILNT 622
           SS  +GC R+  ND+ TWG G       +   L ++ + N +  I KIL T
Sbjct: 295 SSGSSGCLRFYVNDKRTWG-GARAECRRIGGDLATIRDSNALSDISKILET 344


>SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 234 GYGRRLHNAV-KTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWHEGHKDIVEDY 410
           G  R L   + + V+ L   Q   VC   +  + +QGI+ A  F   LW+E H + V+  
Sbjct: 244 GMSRSLSQTICERVKLLGFKQFKIVCTVTIGEMNNQGIRVASRF---LWNEKHDNWVDSV 300

Query: 411 FPS 419
           F S
Sbjct: 301 FRS 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,294,797
Number of Sequences: 59808
Number of extensions: 384697
Number of successful extensions: 1234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)