Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00394
(712 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 33 0.76
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 33 0.76
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 33 0.76
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 33 0.76
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 33 0.76
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 33 0.76
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 33 0.76
EF560717-1|ABQ59027.1| 983|Homo sapiens PHC3 protein protein. 31 4.1
U94836-1|AAB53327.1| 884|Homo sapiens ERPROT 213-21 protein. 31 5.4
BC021294-1|AAH21294.1| 884|Homo sapiens calcium homeostasis end... 31 5.4
AF536542-1|AAN77183.1| 916|Homo sapiens SR-related CTD associat... 31 5.4
AB209730-1|BAD92967.1| 399|Homo sapiens calcium homeostasis end... 31 5.4
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 146
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 147 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 183
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 146
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 147 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 183
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 146
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 147 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 183
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 146
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 147 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 183
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 64 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 123
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 124 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 160
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 10 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 69
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 70 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 106
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.76
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITI----KLSNWMLTLAIQRPPDL 528
S TS G+ + +SS +SR+ S+S S + SSS+ + N + + +PP
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKR 146
Query: 529 GRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET 645
++R + P T + +GR R++ T+ I ++ T
Sbjct: 147 DEKERKRRSPSPKPTKVHIGRLTRNV--TKDHIMEIFST 183
>EF560717-1|ABQ59027.1| 983|Homo sapiens PHC3 protein protein.
Length = 983
Score = 31.1 bits (67), Expect = 4.1
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Frame = +1
Query: 358 RSRTSCGTRATRTSSKITSR---ANSNSYSTNR*LSSSANITIKLSNWMLTLAIQ----- 513
+S T C + T TSSKI+ R SN + L S + + S+ +A
Sbjct: 241 QSLTICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPI 300
Query: 514 RPPDLGRRKR--LHQPPCQLATH-LSLGRQQRDIQ 609
+P L + +R LH PP +++ H L L +QQ+ IQ
Sbjct: 301 QPHSLIKHQRIPLHSPPSKVSHHQLILQQQQQQIQ 335
>U94836-1|AAB53327.1| 884|Homo sapiens ERPROT 213-21 protein.
Length = 884
Score = 30.7 bits (66), Expect = 5.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 358 RSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAIQRP-PD--L 528
RSR+ +R++R+ S+ SR+ S SYS R S + S+ L P PD L
Sbjct: 748 RSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRL 807
Query: 529 GRRKRLHQPPCQLATHLS--LGRQQRDIQD 612
G + HQ ++ S LG +++ IQD
Sbjct: 808 GEENKGHQMLVKMGWSGSGGLGAKEQGIQD 837
>BC021294-1|AAH21294.1| 884|Homo sapiens calcium homeostasis
endoplasmic reticulum protein protein.
Length = 884
Score = 30.7 bits (66), Expect = 5.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 358 RSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAIQRP-PD--L 528
RSR+ +R++R+ S+ SR+ S SYS R S + S+ L P PD L
Sbjct: 748 RSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRL 807
Query: 529 GRRKRLHQPPCQLATHLS--LGRQQRDIQD 612
G + HQ ++ S LG +++ IQD
Sbjct: 808 GEENKGHQMLVKMGWSGSGGLGAKEQGIQD 837
>AF536542-1|AAN77183.1| 916|Homo sapiens SR-related CTD associated
factor 6 protein.
Length = 916
Score = 30.7 bits (66), Expect = 5.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 358 RSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAIQRP-PD--L 528
RSR+ +R++R+ S+ SR+ S SYS R S + S+ L P PD L
Sbjct: 780 RSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRL 839
Query: 529 GRRKRLHQPPCQLATHLS--LGRQQRDIQD 612
G + HQ ++ S LG +++ IQD
Sbjct: 840 GEENKGHQMLVKMGWSGSGGLGAKEQGIQD 869
>AB209730-1|BAD92967.1| 399|Homo sapiens calcium homeostasis
endoplasmic reticulum protein variant protein.
Length = 399
Score = 30.7 bits (66), Expect = 5.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 358 RSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAIQRP-PD--L 528
RSR+ +R++R+ S+ SR+ S SYS R S + S+ L P PD L
Sbjct: 263 RSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRL 322
Query: 529 GRRKRLHQPPCQLATHLS--LGRQQRDIQD 612
G + HQ ++ S LG +++ IQD
Sbjct: 323 GEENKGHQMLVKMGWSGSGGLGAKEQGIQD 352
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,020,579
Number of Sequences: 237096
Number of extensions: 1796088
Number of successful extensions: 8005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7998
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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