Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00394
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30760.1 68414.m03761 FAD-binding domain-containing protein s...    32   0.43 
At1g10830.1 68414.m01244 sodium symporter-related contains five ...    30   1.7  
At1g76070.1 68414.m08834 expressed protein                             29   3.0  
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At2g34790.1 68415.m04272 FAD-binding domain-containing protein s...    28   5.3  
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    28   7.0  
At3g08670.1 68416.m01007 expressed protein                             27   9.3  

>At1g30760.1 68414.m03761 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 534

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 527 WGDGKDYTSHHVSWQLISLWEDNNVIFKILNTAYEMYLKLDVNVDSYG-DRKTWGS 691
           W DGK   + H+ W           + K   +AY  Y  LD+ ++  G D + WG+
Sbjct: 445 WQDGKTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGSDAREWGN 500


>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 233 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 147
           KL  W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


>At1g76070.1 68414.m08834 expressed protein
          Length = 272

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 419 AREVIFDDVLVALVPQLVRERHGVLDALRDEPRDDVATDVGAL 291
           A ++ F   +V LVP   R R    DA+ DEP     + +G +
Sbjct: 52  ANKMFFSGPMVPLVPNAARVRRNKSDAVWDEPTSPKVSCIGQI 94


>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1038

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 237 YGRRLHNAVKTVRSLVD-NQGSDVCRDVVSRLVSQ 338
           YG+ +  A+KTVR L    QGSD  R V+S  V++
Sbjct: 118 YGKHVVAAIKTVRGLSQRRQGSDDMRFVMSSFVAK 152


>At2g34790.1 68415.m04272 FAD-binding domain-containing protein
           similar to  SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 532

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +2

Query: 524 TWGDGKDYTSHHVSW--QLISLWEDNNVIFKILNTAYEMYLKLDVNV-DSYGDRKTWGS 691
           TW DGK     H+ W  ++ S  E    + K    AY  Y  LD+   +   D + WG+
Sbjct: 442 TWQDGKVSEERHMKWIREMYSYME--QYVSKNPRQAYVNYRDLDLGTNEGETDAREWGA 498


>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 584 WEDNNVIFKILNTAYEMYLKLDVNVDSYGDRKTW 685
           WED+  I+K+  +  + Y++ ++N D   + + W
Sbjct: 278 WEDDVDIYKLYYSDVDEYVEYNINDDDINELRVW 311


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 8   AADVARIVNASEGSSLPTDILKILTTFKISSVSLAKTAYTMEPGTNCPQT*RPRRHSARR 187
           +A V+  +  S  SS  +   +  T  + SS S + T   + PG++     + R   + R
Sbjct: 184 SASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSR 243

Query: 188 WSLPTQR 208
            S PT R
Sbjct: 244 PSTPTSR 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,840
Number of Sequences: 28952
Number of extensions: 266585
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)