Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00393
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 177 1e-45
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 177 1e-45
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.66
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.6
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 6.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 6.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.1
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 8.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.1
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 177 bits (432), Expect = 1e-45
Identities = 96/208 (46%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVV 368
+SEALEA RIC NKYLVK + S + A F + ++ + C A L
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 369 RLASLRVRSTCSHWTTHHVRAL**QVEGTGHRGSAPCQVQVPRTSKDYVSKKWGFTKYER 548
+ L R VR T CQ + P + VSKKWGF++Y R
Sbjct: 121 KPNGLVARVNIGQ-VLMSVRTK-DSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYAR 178
Query: 549 DEFEKLREEGRLANDGCIVQYRPEHGPL 632
DE+ + R G + DGC ++ + G L
Sbjct: 179 DEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
Score = 86.2 bits (204), Expect = 4e-18
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 257 GEDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 388
G+D FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 56.0 bits (129), Expect = 5e-09
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 382 SGYVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKTTYQRS-GVSQ 537
+G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+ + G SQ
Sbjct: 123 NGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 177 bits (431), Expect = 1e-45
Identities = 96/208 (46%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVV 368
+SEALEA RIC NKYLVK + S + A F + ++ + C A L
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 369 RLASLRVRSTCSHWTTHHVRAL**QVEGTGHRGSAPCQVQVPRTSKDYVSKKWGFTKYER 548
+ L R VR T CQ + P + VSKKWGF++Y R
Sbjct: 121 KPNGLVARVNIGQ-ILMSVRTK-DSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYAR 178
Query: 549 DEFEKLREEGRLANDGCIVQYRPEHGPL 632
DE+ + R G + DGC ++ + G L
Sbjct: 179 DEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
Score = 86.2 bits (204), Expect = 4e-18
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 257 GEDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 388
G+D FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 55.6 bits (128), Expect = 7e-09
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 382 SGYVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKTTYQRS-GVSQ 537
+G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+ + G SQ
Sbjct: 123 NGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 29.1 bits (62), Expect = 0.66
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 403 EHVLRTLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHADMELILSAFFTRYLLQQ 227
E V T +LAKR T PSL P S+ H I + ++ KS A+ IL F + +Q
Sbjct: 953 EPVSTTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAND--ILHLFKKKAKSEQ 1010
Query: 226 IRPASKASELSCSYSSDT 173
S +S + S T
Sbjct: 1011 SNAKSSSSSIKESKKMKT 1028
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 42 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 218
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 219 G 221
G
Sbjct: 94 G 94
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +3
Query: 120 DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNAERI 266
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN +++
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 260 EDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 364
ED H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 75 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 185
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 6.1
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +1
Query: 55 KINRIRNRGSVGVYLIPRSVSSIWVRRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 234
KI R+R+ SV + L S+S W R L H T + + A RL + VS
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391
Query: 235 ISTS*RTRRGSVPYPHETSPFPRYPH 312
+S T +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 99 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 218
DPK+R+F KRA + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 234 NKYLVKNAERISSISA*DFTLSTLSASIKCYRALELIGSRLGCVVRLASLRVRSTC 401
N Y + +R+ S + D L+T S + CY++ ++ S V SL++ STC
Sbjct: 813 NDYDTSDKQRVPSWT--DRILATKSFTRNCYKSCDIRCSDHRPVFATFSLKIFSTC 866
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 85 VGVYLIPRSVSSIWV 129
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,279
Number of Sequences: 5004
Number of extensions: 70568
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -