Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00393
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 170 1e-42
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 159 3e-39
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 144 8e-35
02_02_0317 + 8893593-8894207 31 1.2
11_08_0065 - 28129527-28130435 29 2.8
07_01_0880 + 7301042-7301548 29 3.6
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 29 4.8
07_03_0604 + 19903654-19904598 28 6.4
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 6.4
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 28 6.4
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 6.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 170 bits (413), Expect = 1e-42
Identities = 95/211 (45%), Positives = 125/211 (59%), Gaps = 6/211 (2%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVV 368
SSEALEA RI CNKY+ KNA + + + F + ++ + C A RL +
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGA-----DRLQTGM 115
Query: 369 RLASLRVRSTCSHWTTHHV-RAL**QVEGTGHRGSA--PCQVQVPRTSKDYVSKKWGFTK 539
R A + + TC+ V ++ + H A + + P K S+KWGFTK
Sbjct: 116 RGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
Query: 540 YERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 176 FTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
Score = 95.1 bits (226), Expect = 5e-20
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +2
Query: 248 KERGEDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT 391
K G+D FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGT 125
Score = 51.2 bits (117), Expect = 8e-07
Identities = 26/46 (56%), Positives = 30/46 (65%)
Frame = +1
Query: 385 GYVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKTTYQR 522
G ARV IGQ ++SVR + EALRRAKFKFPGRQK + R
Sbjct: 124 GTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 159 bits (385), Expect = 3e-39
Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 6/205 (2%)
Frame = +3
Query: 30 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 209
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 210 LEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVVRLAS 380
LEA RI CNKY+ K+A + + + A + + ++ + C A RL +R A
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGA-----DRLQTGMRGAF 426
Query: 381 LRVRSTCSHWTTHHV-RAL**QVEGTGHRGSA--PCQVQVPRTSKDYVSKKWGFTKYERD 551
+ TC+ V ++ + H A + + P + S KWGFT+++RD
Sbjct: 427 GKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRD 486
Query: 552 EFEKLREEGRLANDGCIVQYRPEHG 626
E+ KL+ EGR+ DG + HG
Sbjct: 487 EYLKLKSEGRIVPDGVNAKLLTRHG 511
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = +2
Query: 248 KERGEDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT 391
K G+D FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGT 432
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = +1
Query: 382 SGYVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKTTY 516
+G ARVRIGQ ++SVR D A EALRRAKFKFPGRQ+ +
Sbjct: 430 TGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIF 474
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 144 bits (348), Expect = 8e-35
Identities = 81/192 (42%), Positives = 112/192 (58%), Gaps = 6/192 (3%)
Frame = +3
Query: 39 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 218
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 219 GRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVVRLASLRV 389
RI CNKY+ K+A + + + F + ++ + C A RL +R A +
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGA-----DRLQTGMRGAFGKP 118
Query: 390 RSTCSHWTTHHV-RAL**QVEGTGHRGSA--PCQVQVPRTSKDYVSKKWGFTKYERDEFE 560
+ TC+ V ++ + H A + + P K S+KWGFTK+ RDE+
Sbjct: 119 QGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYV 178
Query: 561 KLREEGRLANDG 596
+L+ EGR+ DG
Sbjct: 179 RLKSEGRIMPDG 190
>02_02_0317 + 8893593-8894207
Length = 204
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 663 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 574
G +P P++ R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>11_08_0065 - 28129527-28130435
Length = 302
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 349 PDWDAWCVWQASGYVARVRIGQPIMSVRS 435
P W AW W + ARV++G P M S
Sbjct: 228 PFWGAWRTWTSRFPAARVQVGWPAMEEMS 256
>07_01_0880 + 7301042-7301548
Length = 168
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 433 SSDRWKAQVIEALRRAKFKFPGRQKTTYQRSGVSQSMNVMSLRSCVKRAASPMTAASC 606
SS W + + RR ++ P KTTY+R + Q V V R + P A C
Sbjct: 103 SSGGWMSWLTSFRRRQRWLPPSPGKTTYRRRWLGQDGGVAVDDVVVVRRSPPRRAVPC 160
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 308 G*RGKGEVSCGYGTD--PLRVLYEVLIAADTSCLQSL 204
G R E SC Y + PL L E+L+ A+T C L
Sbjct: 231 GMRAVSEFSCTYSLEDLPLETLLEILVFANTFCCDRL 267
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 618 PGGTARCSRHWRGGPLHAASQTHH 547
PGG R R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 522 SLIRSLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSN---ANTCYV 388
+L+ +LLT E+ L T + LCLPP+ H AN Y+
Sbjct: 4 TLVANLLTYWEVFLVTEFGMPTLCLPPIATYWSHASFKTDLMANQSYI 51
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 313 DADNVERVKSHADMELILSAFFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 149
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 148 S 146
+
Sbjct: 203 A 203
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 141 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 233
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,600,383
Number of Sequences: 37544
Number of extensions: 535141
Number of successful extensions: 1619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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