Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00393
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 61 8e-10
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 38 0.011
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 29 2.8
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 29 3.7
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64) 29 3.7
SB_3155| Best HMM Match : C1_4 (HMM E-Value=0.16) 29 3.7
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 4.9
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 28 8.6
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +1
Query: 385 GYVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 507
G VARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 10 GTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 359 MRGAFGKPQGT 391
MRGAFGKPQGT
Sbjct: 1 MRGAFGKPQGT 11
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 37.5 bits (83), Expect = 0.011
Identities = 27/81 (33%), Positives = 38/81 (46%)
Frame = -2
Query: 636 RREVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRSLLTSGELELGTAQSLDD 457
+R++HV G + + H GG L Q H + NP++ L+ LE TA +
Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPT 68
Query: 456 LCLPPVTRAHGHDGLSNANTC 394
V A+ DGLSNAN C
Sbjct: 69 QTSRSVALAY--DGLSNANVC 87
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 213 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 97
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 316 IDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYSSDTK 170
+ A+ V+R+ SH M+ + S Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 45 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 224
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 225 IC 230
+C
Sbjct: 500 MC 501
>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
Length = 361
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 633 REVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRSLLTSGELEL 481
R H+P G +H P+HA S + N +++ ++LT GE L
Sbjct: 15 RLFHLPSGNRLLVQHPPAFPIHAQSYLTRRRAVFNTMAVLHTVLTKGEQTL 65
>SB_3155| Best HMM Match : C1_4 (HMM E-Value=0.16)
Length = 295
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 303 LSASIKCYRALELIGSRLGCVVRLASLRVRSTCSHW--TTHHVRAL**QVEGTGHRGSAP 476
L+ASI+C R L +I R ++ +S V S SH TH R L G
Sbjct: 30 LTASIECERLLAIISRRSRVMITKSSESVNSCRSHLKIPTHRWRRL----YGATQTSQTK 85
Query: 477 CQVQVPRTSKDYVSKKWGFT--KYERDEFEKLRE 572
+ S WGF K + +EF L +
Sbjct: 86 NNAMITDKSGKITLSVWGFNIDKIQENEFYTLTD 119
>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 888
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 456 GHRGSAPCQVQVPRTSKDYVSKKWGFTKYERDEF 557
G +G PC QV T Y K GF Y+ D F
Sbjct: 368 GAKGFEPCGPQVKITKPLYERLKSGFVTYQEDAF 401
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 501 TSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYV 388
++G + T D+C+P + HGH +ANT CYV
Sbjct: 73 SAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYV 110
>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 8.6
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 7/162 (4%)
Frame = -2
Query: 579 GPLHAASQTHHVHTL*NPTSLI---RSLLTSG---ELELGTAQSLDDLCLPPVTRAH-GH 421
G + + + + HVH+ P ++ +S++TSG + G + + P V H
Sbjct: 523 GSIVSITSSGHVHSRGPPNVVVSSAQSVITSGGTLSVSEGPVPQVGVIRAPIVIPPHIKE 582
Query: 420 DGLSNANTCYVP*GLPNAPRIPVWSLSAPAHDNILLMRITWKG*SLMRIWN*SSPRSLRG 241
DGLS P LP PR+ P ++ R L N SPR L
Sbjct: 583 DGLSRPPILQ-PVKLPQGPRMQ----GRPISGSVSQSR------PLDPAGNAYSPRPLYT 631
Query: 240 TYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRR 115
T S ++ P PLSSA R P R +++S N+R
Sbjct: 632 T--SGNLIRPPPLSSASSQTRLPVIRAGHPASGAITSAANQR 671
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -3
Query: 185 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 57
FVGH + ++V+N+ Q+ DT +G+ + P + +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,184,844
Number of Sequences: 59808
Number of extensions: 582054
Number of successful extensions: 1888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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