Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00393
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   186   1e-47
Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    29   3.3  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    29   4.3  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  186 bits (454), Expect = 1e-47
 Identities = 100/211 (47%), Positives = 126/211 (59%), Gaps = 3/211 (1%)
 Frame = +3

Query: 18  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRANVD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVV 368
           SSEALEA RIC NKY+VKN  +      +    F ++ ++  + C  A  L     G   
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 369 RLASLRVRSTCSHWTTHHVRAL**QVEGTGHRGSAPCQVQVPRTSKDYVSKKWGFTKYER 548
           +   L  R          +R     V+          + + P       S+KWGFTK++R
Sbjct: 121 KPQGLVARVDIGD-ILFSMRIKEGNVK-HAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDR 178

Query: 549 DEFEKLREEGRLANDGCIVQYRPEHGPLDAW 641
           +++E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 179 EDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = +2

Query: 248 KERGEDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 388
           K  G+D FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQG 124



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/40 (57%), Positives = 26/40 (65%)
 Frame = +1

Query: 385 GYVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQ 504
           G VARV IG  + S+R  +      IEA RRAKFKFPGRQ
Sbjct: 124 GLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQ 163


>Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical
           protein F36A2.4 protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 486 QVPRTSKDYVSKKWGFTKYERDEFEKLRE 572
           ++ + +KDYV K W   K +RD+++ + +
Sbjct: 54  KIEQNAKDYVDKLWSVAKRDRDKYKNVED 82


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 401 FALDNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRLR 514
           F+LD+P+ P +L  GG     + C    + SP + R+R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLRMR 73


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 78  RFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 224
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 381 GLPNAPRIPVWSLSAPA 331
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = -3

Query: 263 PLRVLYEVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPT 84
           P++   E  ++AD S LQ    QL   + H V   + V+ V +LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHY-VIPV-ALLCSILGTIVRFCYSDD 281

Query: 83  EPRFRIRFIFAVP 45
           E  F  RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 3/188 (1%)
 Frame = +1

Query: 130  RRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAAISTS*RTRRGSVPYPHETSPFPRYP 309
            R+  + +T H  CTW  T ++   +        +    +     G V Y  ET P    P
Sbjct: 1214 RKVYSWSTHHMTCTWWATQIHVYGETSRPPTDGSPSEDTFLLGFGRVQYARETFPGKDVP 1273

Query: 310  -HQ*NVI-VRWS**APDWDAWCVWQASGYVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 483
             H+     ++ +  A + DA C+  A G V R  + + I+S  +  R    + EA    K
Sbjct: 1274 LHKVTAFDLKMAWTAQNRDA-CLTIADG-VHRAHMLRRILSNDAVKRLNVHLEEASDTPK 1331

Query: 484  FKFPGRQKTTYQRSGVS-QSMNVMSLRSCVKRAASPMTAASCSTARNMDLSTLGGRFRLR 660
               P +++    R G S    N   L   +    + +  A C  A ++ + +L G  +  
Sbjct: 1332 DPSPKKKEEKTHRRGYSVTEANPWMLTQLIDEVGTKL-VAHCEQASDVPIDSLLGVHQST 1390

Query: 661  SSMYNLIN 684
                 L+N
Sbjct: 1391 MDDVKLLN 1398


>Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical
           protein T23F6.3 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 505 KTTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTARNMDLST 636
           +T     G ++ MNV+  ++CV+R     T  SC   R   ++T
Sbjct: 215 ETPVDPQGCNRCMNVIGCKTCVQRWHRSSTQPSCPLCRRRWIAT 258


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 532 SQSMNVMSLRSCVKRAASPMTAASCSTARNM 624
           ++  ++MS+ S   R  SPMT+  CS+A  M
Sbjct: 88  AEKQHIMSVMSRSNRNTSPMTSRRCSSALQM 118


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 531 FTKYERDEFEKLREEGRLANDGCIVQYR 614
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,261,023
Number of Sequences: 27780
Number of extensions: 415465
Number of successful extensions: 1223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)