Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00393
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 174 4e-44
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 173 1e-43
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 169 1e-42
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 29 4.0
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.3
At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identica... 27 9.3
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 9.3
At2g18876.1 68415.m02201 expressed protein 27 9.3
At1g33410.1 68414.m04136 expressed protein 27 9.3
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.3
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 174 bits (424), Expect = 4e-44
Identities = 97/211 (45%), Positives = 123/211 (58%), Gaps = 6/211 (2%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVV 368
SSEALEA RI CNKY+VK+A + + I F + ++ + C A RL +
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGA-----DRLQTGM 115
Query: 369 RLASLRVRSTCSHWTTHHVRAL**QVEGTGHRGSAP---CQVQVPRTSKDYVSKKWGFTK 539
R A + TC+ V + GH + + P K VS+KWGFTK
Sbjct: 116 RGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTK 175
Query: 540 YERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 176 FNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 173 bits (421), Expect = 1e-43
Identities = 96/211 (45%), Positives = 123/211 (58%), Gaps = 6/211 (2%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALELIGSRLGCVV 368
SSEALEA RI CNKY+VK+A + + I F + ++ + C A RL +
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGA-----DRLQTGM 115
Query: 369 RLASLRVRSTCSHWTTHHVRAL**QVEGTGHRGSAP---CQVQVPRTSKDYVSKKWGFTK 539
R A + TC+ V + GH + + P K VS+KWGFTK
Sbjct: 116 RGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTK 175
Query: 540 YERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 176 FNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 169 bits (412), Expect = 1e-42
Identities = 97/215 (45%), Positives = 121/215 (56%), Gaps = 10/215 (4%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALEL-------IG 347
SSEALEA RI CNKY+VK+A + + I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 348 SRLGCVVRLASLRVRSTCSHWTTHHVRAL**QVEGTGHRGSAPCQVQVPRTSKDYVSKKW 527
LG R+A +V + H V A + + P K VS+KW
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHA---------QEALRRAKFKFPGRQKIIVSRKW 171
Query: 528 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
GFTK+ R E+ KLR R+ DG ++ HGPL
Sbjct: 172 GFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +3
Query: 132 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 239
K AN DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 177 SDEYEQLSSEALEAGRICCNKYLV 248
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identical
to asparagine synthetase (ASN3) [Arabidopsis thaliana]
GI:3859534
Length = 578
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 161 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKERGEDQFHIRMRLHPFHVIRINKMLSCA 334
+++LGV+ + + E FGG Y + +KE E+ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHQYDCLRANKSTSAW 390
Query: 335 GAD 343
G +
Sbjct: 391 GVE 393
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 126 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 19
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 322 HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYS 182
+F D DN+E + + L+ S F L P S A +C Y+
Sbjct: 27 NFADVDNLENCIKYLNQSLVTSGFSASLDLFATDPVSIARTCNCVYA 73
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 99 DP-KIRIFDLGKKRANVDDFPLCVHLVSDEY-EQLSSEALEAGRICCNKYLV 248
DP K + G+ ANV F L ++L++D Y +S+ E RIC ++++
Sbjct: 979 DPTKAATYTRGRLWANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFII 1030
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 93 VPDPKIRIFDLGKKRANVDDFPL 161
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,559
Number of Sequences: 28952
Number of extensions: 393968
Number of successful extensions: 1179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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