Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00391
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    28   6.5  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    28   6.5  
AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    27   8.6  

>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 197 HFVTLVQIFYIIDYPLVLYLLLITCVFHKNFRYKFLK 87
           +F+T++ I Y     L++ +L+    FHK F Y F +
Sbjct: 2   NFMTILSICYGTATVLLMIILIFLLTFHKLFIYSFYR 38


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 197 HFVTLVQIFYIIDYPLVLYLLLITCVFHKNFRYKFLK 87
           +F+T++ I Y     L++ +L+    FHK F Y F +
Sbjct: 2   NFMTILSICYGTATVLLMIILIFLLTFHKLFIYSFYR 38


>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 528 CQCQCDSRCDGDRRANKCVCGLVR 457
           C+C+CD +C+  +  +K  C  VR
Sbjct: 240 CKCECDLKCEEGKILHKDRCDCVR 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,636,729
Number of Sequences: 27780
Number of extensions: 272644
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)