Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00390
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.0  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   5.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   5.3  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   7.0  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   7.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   9.3  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   9.3  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 260 IPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 418
           +P  IPV  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 173 LPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 251 GCKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 376
           G ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 37  GSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 584 ICCSSTCRPGTTTRQ*LSRSPCKMITSVLLSRSWSTD 694
           IC S TCR  T  R  L+     +I + L++ ++  D
Sbjct: 146 ICVSHTCRENTVLRAVLNPKRVSVIPNALVAENFQPD 182


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +2

Query: 509 SCPLTYRSRQ*WTRTWLSSTSNFLWICCSSTCRPGTTTRQ*LSRSPCKMITSVLLSRSWS 688
           S  +++ S    T T  S  ++   I  +ST R  TT     S S     T+   +   S
Sbjct: 614 STQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFAS 673

Query: 689 TDSCAHENLTCSHTRTSCGPPDTT 760
             S  + N+T S +  S  PP T+
Sbjct: 674 ESSSFYSNVTTSSSTVSTPPPTTS 697


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 562 LNKQLLMDLLFKYVSTGDYNKAVTITKSLQDDNVGFV 672
           + K +   L+  Y+S    +KA  I +S +DD  GF+
Sbjct: 336 ITKDMKYYLIATYLSRSRLSKAERILQSTEDDQTGFL 372


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 619 NKAVTITKSLQDDNV--GFVIKELVDRLLR 702
           NK ++ITK L  DN+  G    E++D L+R
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIR 98


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 122 WRADRTCRLLGRGEDRQRGTVFGLPQLLQRKP 217
           W+A    +  G G+++  GTV  +  +L  KP
Sbjct: 254 WKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKP 285


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 611 PVDTYLNSRSIRSCLLRKATCESIIVGSCK*ADSCSRD 498
           P+ TYLN   +RS L       ++  G    AD C+ D
Sbjct: 362 PLITYLNREDVRSSLHATKASTALTSGEGVFADGCNFD 399


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 561 PQQATSYGSAVQVRVDRGLQQGSD 632
           P +A +YG+AVQ  V  G ++GSD
Sbjct: 394 PDEAVAYGAAVQAGVLSG-EEGSD 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,054
Number of Sequences: 5004
Number of extensions: 59501
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)