Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00390
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 31 0.79
12_01_0856 + 8034181-8035425 30 2.4
12_01_0736 + 6582371-6585370 30 2.4
07_01_0245 - 1803170-1803887,1803971-1804641 29 3.2
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498... 29 4.2
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 29 5.5
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 29 5.5
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 29 5.5
12_01_0718 + 6339982-6342981 28 7.3
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 28 7.3
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 28 7.3
03_02_0577 - 9590096-9590432,9590680-9590750,9590890-9590983,959... 28 9.7
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +1
Query: 616 YNKAVTITKSL--QDDNVGFVIKELVDRLLRA*EPNVFAYAD-KLWSAGHH 759
YN A+++ +SL +D NV F+++ +D+L+R E VFAY +L G H
Sbjct: 501 YNHAISVIQSLGEEDINVKFLVQ--LDKLIRLLETPVFAYLRLQLLEPGKH 549
>12_01_0856 + 8034181-8035425
Length = 414
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 436 RHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVI 320
RHSV+DD D +R+V+ A+ N+ A D V+
Sbjct: 242 RHSVEDDRTDVKRQKTRHVNSALANEIDAMNAKLIDTVV 280
>12_01_0736 + 6582371-6585370
Length = 999
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 184 YSPPLTILPSPQ*STCSISSPVKGSLSSLYCPMYGRSEYGYFRSTLVT*LGSLSNGSI 11
+SP L I+ P CS+S P+ S S+L + Y Y + L LSN S+
Sbjct: 225 FSPKLQIISMPY---CSLSGPICRSFSALKSLVVIELHYNYLSGPIPEFLADLSNLSV 279
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 241 PLLTSWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISSPVKGSLSSLY 95
P + YC+ L +L PL + PSP+ S +P G+L++ +
Sbjct: 33 PSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81
>01_01_0653 -
4981517-4981738,4981841-4981976,4982066-4982121,
4982228-4982284,4982373-4982450,4982533-4982619,
4982707-4982767,4982862-4982950,4983048-4983145,
4983242-4983341,4983983-4984042
Length = 347
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 693 SVDQLLDNKTDVIILQGLRDSHCLVVVPGRHVL 595
SVD+L+D DV+ GL CL V G ++L
Sbjct: 100 SVDELVDQVADVLDFFGLGSVMCLGVTAGAYIL 132
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 752 PADHNLSAYANTLGSHARRSLSTSSLITKPTLSSCKDFVIVTAL 621
P N S N+ H+R L T + P C DF V+A+
Sbjct: 336 PGKENQSCTTNSFRDHSRFPLKTVPKCSNPEEEKCADFQTVSAV 379
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 8 RDGPIRQAPQLRDQRGPEVSVLRPAVH 88
RD +R+ +LR +RG +SVL A+H
Sbjct: 435 RDNAVREVEELRQKRGQMLSVLVTAMH 461
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 630 HCLVVVPGRHVLEQQIHKKLLVEESHVRVHHCRLL 526
HCLVV PG + Q++ ++ ++ +R RLL
Sbjct: 820 HCLVVRPGARPVRQKVRRQAPERQAFIREEVARLL 854
>12_01_0718 + 6339982-6342981
Length = 999
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 184 YSPPLTILPSPQ*STCSISSPVKGSLSSLYCPMYGRSEYGYFRSTLVT*LGSLSN 20
+SP L I+ P CS+S P+ S S+L + Y Y + L LSN
Sbjct: 225 FSPKLQIISMPY---CSLSGPICRSFSALKSLVVIELHYNYLSGPIPEFLAHLSN 276
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 693 SVDQLLDNKTDVIILQGLRDSHCLVVVPGRHVL 595
SVD+L D +DV+ GL CL V G ++L
Sbjct: 101 SVDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 241 GPTRVQDPQQDPGARRERLRHPGLHQ 318
GP+ Q PQ P + HPG HQ
Sbjct: 534 GPSAAQAPQMPPAPGNVGMSHPGSHQ 559
>03_02_0577 -
9590096-9590432,9590680-9590750,9590890-9590983,
9591070-9591137,9591230-9591296,9591436-9591566,
9591774-9591847,9592017-9592092,9594082-9594147,
9595432-9595498,9595785-9595861,9596701-9596806,
9596906-9596979,9597587-9597682,9597781-9597972,
9598051-9598200
Length = 581
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 62 VSVLRPAVHRAVQAAQAPLYWRADRT 139
+S LR AVHRAV+A+ PL R R+
Sbjct: 1 MSWLRNAVHRAVEASGGPLLTRTVRS 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,334
Number of Sequences: 37544
Number of extensions: 447696
Number of successful extensions: 1471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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