Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00390
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 30 2.4
SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 29 4.3
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9) 28 7.5
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6) 28 7.5
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29) 28 9.9
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 28 9.9
SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
Length = 519
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 39 YVTNVDLKYPYSDLPYIGQY-KLLKLPFTGELIEH 140
Y+ +VDLKY Y +P ++ K+LK + G+L ++
Sbjct: 298 YMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332
>SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 145 STCSISSPVKGSLSSLYCPMYG-RSEYGYFRSTL 47
S C + +P GS LY P G RS Y YF +L
Sbjct: 197 SRCQLHTPTSGSRCQLYTPTSGSRSLYTYFGESL 230
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Frame = +1
Query: 484 ASAVLSRLQLSAYLQE--PTMMDSHVAFLNKQLLMDLLFKYVSTGDY-------NKAVTI 636
AS S ++LS LQ + D AFLN+ + DLL + ++ + + +T+
Sbjct: 238 ASEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTL 297
Query: 637 TKSLQDDNVGFVIKELVD 690
TK + D+ +V++ L D
Sbjct: 298 TKYFETDSSDYVVELLQD 315
>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +1
Query: 523 LQEPTMMDSHVAFLNKQLLMDLLFKYVSTGDYNKAVTITKSLQDDNVGFVIKELVDRLLR 702
+Q T D HV +L+ Q +++L+K + + T T SL D +K+L D R
Sbjct: 213 VQHRTQEDRHVLWLDMQNTVNVLYKPRALSQVHHPSTFT-SLSADK-RKALKKLRDVQSR 270
Query: 703 A*EPNVFAYADKLWSAGHHD 762
N+ Y LW +D
Sbjct: 271 HENKNITHYGFWLWQRDDND 290
>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
Length = 395
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 554 WLSSTSNFLWICCSSTCRPGTTTRQ*LSRSPCKMITSVLLSRSWSTDSCAHENLTCSH 727
W+ S SN LW C+S C + Q + S ++ V SW T + H+ C+H
Sbjct: 214 WIKSVSNHLW-WCASACEGSSELLQEMWLS---VVFHVAGIHSWDTATMYHQ---CAH 264
>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
Length = 1354
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 460 SGCRAKEQASAVLSRLQLSAYLQEPTMMDSHVAFLNKQL-LMDLLFKYVSTGDYNKAVTI 636
+G + ++A+L RL+ +E +D + +++ L ++ K V DY V +
Sbjct: 64 TGSGSSYASAALLDRLKKRQVTREVRKIDMMLGSTTREVELANITIKAVGGSDYEMGVEV 123
Query: 637 TKSLQD-DNVGFVIKEL-VDRLL 699
TK ++ + V + KEL VD L+
Sbjct: 124 TKEEKEPEVVSRIRKELYVDDLI 146
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 302 TRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 418
T KDDSV V + I+P S++ +T V E G V
Sbjct: 206 TTTETKDDSVTDVNTKKSAILPESSQAVTDQVEENDGSV 244
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 581 WICCSSTCRPGTTTRQ*LSRSP 646
W CS+TC GT TR L +P
Sbjct: 614 WTSCSATCGEGTMTRSRLCDNP 635
>SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 125 RADRTCRLLGRGEDRQRGTVFGLPQLLQRKPTVPRGQQRARQ 250
R R RL+GR EDRQ GL +++K V R + Q
Sbjct: 534 RCRRINRLIGRREDRQTRLDLGLEPKVKKKVRVRRWVKECHQ 575
>SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 439 YRHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRV 323
Y + ++ + +NDSRN S + + G+ H +Y RV
Sbjct: 139 YVNDIELSPLNGSLNDSRNHSASRKGKGKQHTGNYLSRV 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,806,355
Number of Sequences: 59808
Number of extensions: 512816
Number of successful extensions: 1549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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