Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00390
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 175 PLTILPSPQ*STCSISSPVKGSLSS 101
           P+  +P PQ +  +I SPV+  LSS
Sbjct: 792 PVYCVPVPQVNDSTILSPVREKLSS 816


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 275 PVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSA-RDITRIVN 400
           P+R  +DC T + +  D   +V L       +S  R +  IV+
Sbjct: 419 PIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGWRKLRNIVH 461


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 522 LTGADNDGLARGFPQQATSY 581
           LT  D DG  +GFP + + Y
Sbjct: 17  LTTQDVDGFLQGFPGKNSPY 36


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 123 GELIEHVDYWGEGRIVNGGLYSGFRNCYNVN 215
           G +I + D  G+G++     Y  F   Y+V+
Sbjct: 277 GHMISYDDTDGDGKLNVNEFYMAFSKLYSVS 307


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 719 TLGSHARRSLSTSSLITKPTLSS 651
           TLG H +   + SSL++  + SS
Sbjct: 170 TLGHHHQNGATPSSLVSSASASS 192


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 554 WLSSTSNFLWICCSSTCRPGTTTRQ 628
           W   T +     CS  C PG   +Q
Sbjct: 437 WARGTKDIPISACSLPCEPGMIKKQ 461


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 554 WLSSTSNFLWICCSSTCRPGTTTRQ 628
           W   T +     CS  C PG   +Q
Sbjct: 527 WARGTKDIPISACSLPCEPGMIKKQ 551


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 176  GTVFGLPQLLQRKPTVPRGQQRARQGCKIPN 268
            GT    PQL  +KP    G      G K+P+
Sbjct: 1118 GTADNKPQLKPQKPFTSPGGIPGPNGIKMPS 1148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,771
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)