Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00389
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 26 2.4
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 3.2
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 25 4.2
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 4.2
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 5.5
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 25 5.5
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 5.5
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 24 9.7
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 24 9.7
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 24 9.7
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 24 9.7
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 200
W W GSVD SG N R S TS+LR+
Sbjct: 39 WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -3
Query: 178 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 41
+++ FL L PLS ++ + ++P+ +QH++ L ++L P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 4.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 118 MESTDPQCHILQHRRPRLPLMQLEAPCSF 32
M+S Q ++L RP LPL P F
Sbjct: 88 MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 4.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 275 TSPVLDIAPGSDLFCFIWN*NA 340
T P+ + P ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 192 LRKFSGRQHCVTVDCCCHGSPTP*GDAKHHPFSTSL 299
L FS C+T H +P D ++HP T+L
Sbjct: 212 LNNFSRDTRCLTPVKDFHYDDSPVNDVEYHPHHTNL 247
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 375 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 280
LH+I KF +L + + +++ AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 24 QKLKEHGASSCISGKRGRRCCNIWHWGS 107
Q E A +C G G C +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +3
Query: 72 GRRCCNIWHWGSVDSISGSRARFQLSGNSG 161
G C N+W + + G R + + G G
Sbjct: 56 GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 3 CVSLEETQKLKEH 41
C+SLEE +K+KE+
Sbjct: 39 CISLEEFEKIKEY 51
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 127 EPLMESTDPQCHILQHRRPRLPLMQL-EAPCSF 32
+P +TD Q ++ +H PRLP + + P SF
Sbjct: 506 DPDPSNTDTQWNVEEHINPRLPEGSINDYPSSF 538
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 72 GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 176
G R C W S+D +S S A Q G +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,700
Number of Sequences: 5004
Number of extensions: 27694
Number of successful extensions: 54
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -