Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00389
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   3.1  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   5.4  
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662...    27   5.4  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   5.4  
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    27   5.4  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    27   7.1  
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389...    26   9.4  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = +3

Query: 135 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 242
           R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 GSRARFQLSGNSGRKHSRCCTS 188
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>11_06_0027 +
           19363678-19363698,19364442-19364484,19366240-19366276,
           19366359-19366602,19366749-19366765,19366901-19366986,
           19367347-19367378,19367455-19367615,19367722-19367818,
           19367894-19368085,19368172-19368233,19368302-19368448,
           19368776-19369589
          Length = 650

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 193 YGNLVAGSIVSQLTAAAMVAPRHEVMLNITRSRHRSRIGPFLF 321
           +GN    +++ ++  A M+   + + LNI+     S IGP LF
Sbjct: 506 FGNYSRSALLRRINDACMLLGTNRLSLNISVMSRGSIIGPVLF 548


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 118 MESTDPQCHILQHRRPRLPL 59
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 311 GPILERCRERVMFSITSWRGATMAAAVNCDTMLP 210
           G ILE     V+ S+ SWR      A+ C  ++P
Sbjct: 351 GTILEASLAWVVISVLSWRWLLALTALPCSLLIP 384


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 9   SLEETQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 176
           S ++ +   E   S    G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 86  SAQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>04_03_0985 -
           21438036-21438116,21438373-21438495,21438903-21438995,
           21439176-21439388,21439589-21439687,21440248-21440317,
           21442549-21442619,21442817-21442954,21443034-21443132,
           21444061-21444144,21444268-21444324,21444594-21444683,
           21444886-21445026,21445778-21445882,21445962-21446114,
           21446215-21446316,21446404-21446562,21447039-21447222,
           21447336-21447418,21447523-21447588,21447736-21447793,
           21447903-21448003,21448269-21448355,21449063-21449185,
           21449285-21449364,21449857-21450066,21450159-21450270,
           21450709-21450927,21451356-21451726,21451866-21451965,
           21452544-21452752,21453232-21453337,21453435-21453767
          Length = 1439

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSG 209
           GS DS+ G + R   + N   K   C T I LRK SG
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSG 704


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,944
Number of Sequences: 37544
Number of extensions: 207243
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)