Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00389
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   2.3  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   2.3  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   3.1  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   4.1  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      27   4.1  
SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_4850| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_37204| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-25)               26   9.5  
SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)                       26   9.5  

>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
 Frame = +3

Query: 78  RCC---NIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHG 248
           +CC   N  HW         RA F   G S  +     T + R    + +C+ +  CC  
Sbjct: 175 KCCKPANHPHWYGHCYDQNVRASFDKEGTSKCRDGYFMTGLYRGNCDQIYCIEMFKCCKM 234

Query: 249 SPTP*GDAKHHPFSTSLQDRTFSVLFGIKMHLNF 350
            PTP          T + D T + L  +  +L +
Sbjct: 235 VPTPPKMQSLDDVKTRVMDETMAELALLAHYLGY 268


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 135 RFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHGSPTP 260
           R  +SG+ G+     C + L+ + GR+   T +CC   +PTP
Sbjct: 677 RSPVSGHRGQ-FLFVCEATLKAYDGRRPSQTSNCCEKTAPTP 717


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 81  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 200
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 93  WHWGSVDSISGSRARFQLSGNSGRKHSR 176
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 197
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 388 FFFFFTSHRQIY*KFKC--ILIPNKTEKVRSW 299
           FFF+F   R+++   KC  + I N T+  RSW
Sbjct: 141 FFFYFKEARRVFENRKCSVVEIINFTDITRSW 172


>SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 311 GPILERCRERVMFSITSWRGATMAAAVN 228
           GPI+  CR R  F I +  G+T+   +N
Sbjct: 92  GPIINYCRNRFTFHIWAIIGSTVLGRIN 119


>SB_4850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 271 ASPHGVGLPWQQQSTVTQCCRPLNFRSMLVQQRLCFLPLFPLS*N 137
           ASP+ V  PW+Q    +   R L+ +  L+++ L   P  P   N
Sbjct: 222 ASPNTVVFPWEQFEKSSIIKRQLSAKGKLLEKDLIIAPCCPAGGN 266


>SB_37204| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-25)
          Length = 455

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 3   CVSLEETQKLKEHGASSCI 59
           CVSLEE++  + HG+  C+
Sbjct: 110 CVSLEESKLTEAHGSYDCV 128


>SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)
          Length = 602

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 303 PGAMSRTGDV*HHLMAWGYHGSSSQL 226
           P    + GD+  +L+ W Y G SS +
Sbjct: 224 PARKYQNGDLTQYLLTWSYRGDSSNM 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,979,522
Number of Sequences: 59808
Number of extensions: 231297
Number of successful extensions: 454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)