Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00389
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.17
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.22
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.22
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.22
U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical ... 27 6.3
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 8.4
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.17
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 51 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 155
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.22
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 36 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 206
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 207 GRQHCVTVDCCCHGS 251
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 3 CVSLEETQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCC 182
C+ + + KE+G CI G G C + +G R + + RK RC
Sbjct: 1128 CLCMHGGECNKENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC- 1186
Query: 183 TSILRKFSGRQHC 221
L +SG +HC
Sbjct: 1187 -ECLPGWSG-EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.22
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 36 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 206
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 207 GRQHCVTVDCCCHGS 251
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 3 CVSLEETQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCC 182
C+ + + KE+G CI G G C + +G R + + RK RC
Sbjct: 1128 CLCMHGGECNKENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC- 1186
Query: 183 TSILRKFSGRQHC 221
L +SG +HC
Sbjct: 1187 -ECLPGWSG-EHC 1197
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 31.5 bits (68), Expect = 0.22
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 255 WGYHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 97
+ YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 894 YAYHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical
protein T07E3.2 protein.
Length = 89
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 308 DLFCFIWN*NAFKFLINLSMRCKKKKKK 391
DLF I+N F + L + CKKKK K
Sbjct: 4 DLFVIIFNFCIITFSVYLGIGCKKKKNK 31
>AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical
protein E03E2.1 protein.
Length = 506
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 313 KVRSWSDVENG*CLASPHGVGLPWQQQSTVTQCCRPLNFRSMLVQQRLCFLP 158
K+ + +EN + +P G + C RP F ++ QQR F+P
Sbjct: 387 KIGKYQFLENVQIVVNPWGPHHDREIWGNDVDCFRPSRFENLTEQQRKAFMP 438
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -3
Query: 121 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 32
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,817,302
Number of Sequences: 27780
Number of extensions: 169417
Number of successful extensions: 362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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